Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1257 ATGGATTCAAGTTTCGTATTCGAAGTCCCCAGCGACGAAGAACCCGAGTACGAACCTGACGAGGATGAAGAAGAAGAAGAAGGAGAAGGAGAAGGAGCAGCACAGACCGCCTCTCAATCTCCATGGGACTTCGCTTCATACTCCGAGACTGTTGCCGAAGAACACGCTCGTCGAAGCACAACCTCAGTCGATTTCAAGATCTCCAAAGCGCTTGAGCAACGTCGTCTCCCAATCCCCAACCAAGACGATAGCTCCGAATCCGAATCTGACCACCAAGAGGATTATACGCCCGAAGACGCTGACGAGGCGGCCAGTGTCGGCGGTGACCGCAAGTCCTTCTTTGCTCCTGCTGATGGAGCTTCTTTTCATGCCAATTCGTTCTTGGAGCTTAACCTCTCTCGACCGTTGCTTCGAGCTTGCGAAGCTTTGGGATACACTAAACCCACCCCAATTCAGGCAGCCTGCATACCAATAGCTTTAACTGGGCGAGATATTTGTGGGAGCGCCATTACTGGCTCTGGCAAGACGGCTGCCTTTTCCTTACCTACATTAGAGAGGTTATTGTTCCGTCCAAAACGTGTGCAAGCAATCAGGGTCCTTGTTCTTACTCCAACCAGAGAGTTGGCTGTTCAGGTCCATAGTATGATGGAAAAACTCGCTCAATTTACTGATATCCGATGTTGCCTGATAGTTGGAGGGCTTTCATCAAAGATGCAAGAGACAGCTTTGAGATCAATGCCTGATGTTGTTGTGGCTACCCCGGGACGGATGATAGATCATTTACGCAATTCCATGTCTGTGGATTTGGAAGATCTTGCAGTTCTAATCCTTGATGAGGCAGATCGCCTTCTGGAGCTTGGATTTAATGCTGAAATTCGTGAACTGGTTCGCTTATGTCCTAAACGGAGGCAGACCATGCTATTTTCAGCTACGATGACTGAAGAAGTTGATGAGCTAGTCAAGCTTTCTATGACCAAACCAATGCGCCTTGCTGCTGATCCATCCACGAAACGGCCAGCAACATTGACAGAAGAGGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGTGGAACCAAACAAGCTGCACATAGGTTGAAGATTTTGTTTGGATTGGCTGGCTTTAAGGCTGCTGAGCTTCATGGAAATCTTACACAAGTCCAGCGTCTTGATGCTTTGGAACTTTTCAGGAAGCAGCAAGTTGATTTTTTGATTGCAACAGATGTTGCCGCTCGTGGACTTGACATAATTGGTGTTCAAACAGTTATAAACTATGCATGTCCTCGTGATCTTACCAGTTACGTTCATCGTGTTGGTCGTACAGCAAGGGCTGGTAGAGAAGGATATGCTGTTACATTTGTAACTGATAATGATAGATCTCTCTTGAAATCTATAGTGAAGAGAGCTGGTTCAAAGCTGAGGAGCCGAATTGTTGCAGAGCAATCTATAATTAAGTGGTCTCATATGATTGAACAAATGGAAGATCAAGTTGCTGCCATTCTCCAGGAAGAGAGGGAAGAGAGAATCCTCAGAAAAGCTGAAATGGAAGCAACAAAGGCTGAAAACATGATTGCCCATAAGGATGATATCTACTCACGCCCTAAAAGAACCTGGTTTGCAACAGAAAAGGAGAAGAAGTCTGTGGCAAAGGCAGCAAAGGATTCTCTAGAAAAGGAAAATGGTTCTGGGAATAATGTAATCAGTGCCCAACAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAAAGAGAACGAGAGAAAAATTTGCCACGGAAGAAGCGGCGAAAACTGGAAGCAGCTAGAGAGAGATTGGAGGATGAAAATCAAATTCACAAGTTAAAAGAAGGGGGCAGGGAAAATAAGAAAGAAAAGGCTGGAATCTCACTTGTAGGCATAGGTTATAGACGGGCAAAAGCAGTGAAGGCTGTAAAGAAGGCACAAGATGCTGGCAAGATTGGGAGGAAGGCCAATAAAAAATCAGAACGGCCTTCTCAAACAAATCAATCAAGGACAGAAGAGATGCAGGAGCTGTTCCAGAGTGACATGAGTGAGAGAAAGCAGAAAAGAAGCATTCGTGGTGCTGGAAAGAAAAAGTCCAAGAATTCATTTAAAAGCAAGTCACGATACAAGCGCAAGTAA 2199 0.4548 MDSSFVFEVPSDEEPEYEPDEDEEEEEGEGEGAAQTASQSPWDFASYSETVAEEHARRSTTSVDFKISKALEQRRLPIPNQDDSSESESDHQEDYTPEDADEAASVGGDRKSFFAPADGASFHANSFLELNLSRPLLRACEALGYTKPTPIQAACIPIALTGRDICGSAITGSGKTAAFSLPTLERLLFRPKRVQAIRVLVLTPTRELAVQVHSMMEKLAQFTDIRCCLIVGGLSSKMQETALRSMPDVVVATPGRMIDHLRNSMSVDLEDLAVLILDEADRLLELGFNAEIRELVRLCPKRRQTMLFSATMTEEVDELVKLSMTKPMRLAADPSTKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTAKAIIFSGTKQAAHRLKILFGLAGFKAAELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKSIVKRAGSKLRSRIVAEQSIIKWSHMIEQMEDQVAAILQEEREERILRKAEMEATKAENMIAHKDDIYSRPKRTWFATEKEKKSVAKAAKDSLEKENGSGNNVISAQQAEDLKMKEKRKREREKNLPRKKRRKLEAARERLEDENQIHKLKEGGRENKKEKAGISLVGIGYRRAKAVKAVKKAQDAGKIGRKANKKSERPSQTNQSRTEEMQELFQSDMSERKQKRSIRGAGKKKSKNSFKSKSRYKRK* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1257 732 SMART ultradead3 144 345 IPR014001 -
Vvi18g1257 732 Coils Coil 523 543 - -
Vvi18g1257 732 MobiDBLite consensus disorder prediction 710 732 - -
Vvi18g1257 732 MobiDBLite consensus disorder prediction 661 732 - -
Vvi18g1257 732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 486 IPR027417 -
Vvi18g1257 732 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 504 IPR001650 -
Vvi18g1257 732 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Vvi18g1257 732 SMART helicmild6 380 465 IPR001650 -
Vvi18g1257 732 MobiDBLite consensus disorder prediction 682 696 - -
Vvi18g1257 732 Gene3D - 88 331 IPR027417 -
Vvi18g1257 732 CDD DEADc_DDX27 136 330 - -
Vvi18g1257 732 MobiDBLite consensus disorder prediction 7 31 - -
Vvi18g1257 732 MobiDBLite consensus disorder prediction 661 681 - -
Vvi18g1257 732 MobiDBLite consensus disorder prediction 1 110 - -
Vvi18g1257 732 Coils Coil 589 609 - -
Vvi18g1257 732 Pfam DEAD/DEAH box helicase 149 319 IPR011545 GO:0003676|GO:0005524
Vvi18g1257 732 Pfam Helicase conserved C-terminal domain 361 465 IPR001650 -
Vvi18g1257 732 Gene3D - 332 499 IPR027417 -
Vvi18g1257 732 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Vvi18g1257 732 CDD SF2_C_DEAD 342 474 - -
Vvi18g1257 732 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 330 IPR014001 -
Vvi18g1257 732 Coils Coil 614 634 - -
Vvi18g1257 732 MobiDBLite consensus disorder prediction 570 624 - -
Vvi18g1257 732 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 102 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1257 Vvi-Chr18 12545316 12565689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1257 113 482 Eukaryotic Initiation Factors Gene Family AT3G13920 34.759 6.85e-52 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1257 K13181 - vvi:100255871 1258.43