Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1256 ATGGACGAATCGCCGATACAGTCCGATACTTTGCACTACTGGTGCTACCAATGCGACAAGCACGTCTCCATCGAAACCCTACCGGATCTGCCTGACGTCATCTGCAACGAATGTAAGACCGGCTTCGTCGAGACAATCGGCGTCGCGCCGACAGCTCCGGAGCCTCGAAACGCTGATCAGATCGACGAGCGCTCTTTGGTATACGCGTTTACGCGACGCCTCCGACATATCGCTCAGCCGCCGAGTGACGACGAAGATCCGCCTTCACTGCCTCCAGATCACGCATCTGAAGACGACTTTCTGAGAATCGATCTTGACGGTTGGGACAATGACGAGGATGAAGACGTGAGCGAGAACGATGGAGAGGGAGAAGAACAAGAAGAAGAAGAAGATCGATCTGATAACGAGAACGAAGGGAATGTATATCGCCCAGAGATAGATCGAGATCACCTCCGGAGGCGTCGCGAGATGTTACGCCGTCGTATTCATAACCTCGCTGCCGCCTCCGGCAACCCGAACGCAGTCCTTGATTGGGCGATCTTGATGGCATCAGAGGACAGCACAATCGAATTTCATTTTCAGATGCCCGAACCCGAAGGTTATACTGGAAATCCGGAAGATTACGTTGATGCAGCTGGATACGAGGAGTTGTTGCAGAACCTGGCCGAGAGCGACGGAGCTGCGAGAAGAGGAGCTCCACCGGCATCGAAATCTGCAATTTCCGCATTACCGAGTGTTGAGATTAAGTCGGAGGAGCAGGTTTTAGCTTGCGCTATTTGTAAAGATGTGGTCTCCATTTGCGAGATTGCTAGGAAATTGCCGTGTGGCCATGGATACCATGGGGATTGCATCGTCCCTTGGTTGAATTCCAGGAATTCTTGCCCTGTGTGTAGGTTTGAATTACCCACAGATGATTCTGAGTATGAAGAAGAGAGGAAGAAGAGATTGGTCCCAACTTCTGGAGGAGCTTCAGGTTCAGGTGGAGAGAATTCGGATTCTGGTTGA 1005 0.5164 MDESPIQSDTLHYWCYQCDKHVSIETLPDLPDVICNECKTGFVETIGVAPTAPEPRNADQIDERSLVYAFTRRLRHIAQPPSDDEDPPSLPPDHASEDDFLRIDLDGWDNDEDEDVSENDGEGEEQEEEEDRSDNENEGNVYRPEIDRDHLRRRREMLRRRIHNLAAASGNPNAVLDWAILMASEDSTIEFHFQMPEPEGYTGNPEDYVDAAGYEELLQNLAESDGAARRGAPPASKSAISALPSVEIKSEEQVLACAICKDVVSICEIARKLPCGHGYHGDCIVPWLNSRNSCPVCRFELPTDDSEYEEERKKRLVPTSGGASGSGGENSDSG* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1256 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 119 302 - -
Vvi18g1256 334 ProSiteProfiles Zinc finger RING-type profile. 257 298 IPR001841 -
Vvi18g1256 334 SUPERFAMILY RING/U-box 252 304 - -
Vvi18g1256 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 222 304 IPR013083 -
Vvi18g1256 334 FunFam E3 ubiquitin-protein ligase RING1-like 220 304 - -
Vvi18g1256 334 Pfam Ring finger domain 256 298 IPR001841 -
Vvi18g1256 334 Coils Coil 148 168 - -
Vvi18g1256 334 MobiDBLite consensus disorder prediction 305 334 - -
Vvi18g1256 334 MobiDBLite consensus disorder prediction 78 97 - -
Vvi18g1256 334 MobiDBLite consensus disorder prediction 105 148 - -
Vvi18g1256 334 Pfam zinc-ribbon 12 46 IPR039525 GO:0061630
Vvi18g1256 334 MobiDBLite consensus disorder prediction 105 135 - -
Vvi18g1256 334 SMART ring_2 257 297 IPR001841 -
Vvi18g1256 334 CDD RING-H2_PA-TM-RING 257 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1256 Vvi-Chr18 12533689 12534693 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1256 90 316 C3H Transcription Factor Family AT5G01980 38.272 3.09e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1256 - - vvi:100250690 583.563