Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1247 ATGGAGAGTGCAAGGAAGTGGAATTCACTTAACCCAACCATCTTAACCATAGTTAAGCCACAACCGCAGTATTTCTATAAATTGGCTTCCTCGTTTCAATCCTCCGGACTCAGCATTCCTTCAGCCGCAATAGCAGCCATTCAAACGAAACACCAGATCACAATGTTTTCAGCAGCGCCTTTCAGCTCCTCTCATTTCGTTGTCCCAAAAGTCGCCGTCAACCAGCGGGCTTCGCCTCCTACGTACGTCAGATTCCGGCAGCCAAAGGTATCCGCCAGTTACACGGCGACCGCCGAGAGAACGATGTCGCACATTGCAAATCCTGCATCACTCTACGACGTCCTTGGGATTAACATGGGCGCCACGTGTCAGGAGATCAAGGCGGCGTATCGACGGTTAGCCAGAGTTTCGCATCCCGACGTCGTGGCTAACAGCCAAAAGGATACATCAGCGGATGAGTTCATCAAGATCCACGCGGCCTACGCCACTCTGTCAGATCCGGAGAAACGCGCCGATTATGATCGCACTCTTTTCAGGCGACGGCGGCCGGTGAGTTCTCCGTTCGCAATGTCCGCATCTGCGGCGACTATGGGGAGTTCGCCGGCTTCAGTATTTTCCGGCCGTTCTAGCCTGAGATGGGAGACAGATCAGTGTTGGTAG 660 0.5333 MESARKWNSLNPTILTIVKPQPQYFYKLASSFQSSGLSIPSAAIAAIQTKHQITMFSAAPFSSSHFVVPKVAVNQRASPPTYVRFRQPKVSASYTATAERTMSHIANPASLYDVLGINMGATCQEIKAAYRRLARVSHPDVVANSQKDTSADEFIKIHAAYATLSDPEKRADYDRTLFRRRRPVSSPFAMSASAATMGSSPASVFSGRSSLRWETDQCW* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1247 219 SMART dnaj_3 109 169 IPR001623 -
Vvi18g1247 219 ProSitePatterns Nt-dnaJ domain signature. 154 173 IPR018253 -
Vvi18g1247 219 ProSiteProfiles dnaJ domain profile. 110 177 IPR001623 -
Vvi18g1247 219 SUPERFAMILY Chaperone J-domain 101 177 IPR036869 -
Vvi18g1247 219 CDD DnaJ 112 166 IPR001623 -
Vvi18g1247 219 PRINTS DnaJ domain signature 112 130 IPR001623 -
Vvi18g1247 219 PRINTS DnaJ domain signature 130 145 IPR001623 -
Vvi18g1247 219 PRINTS DnaJ domain signature 149 169 IPR001623 -
Vvi18g1247 219 Pfam DnaJ domain 111 174 IPR001623 -
Vvi18g1247 219 Gene3D DnaJ domain 96 191 IPR036869 -
Vvi18g1247 219 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 58 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1247 Vvi-Chr18 12432955 12439195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1247 112 174 C2H2 Transcription Factor Family AT1G74250 40.909 4.43e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1247 - - vri:117906050 381.719