Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1241 ATGGCTGGAAACTACAGGTTTGCAATGGACCAAAAGGATATCGTTAGATTCCTGGTCACCACGGTTGGAAGTTTCATCCAAGATCAGTTGATCAATAAAGAACAGAGAGCCCAACACAAAGAACAGTGTGCAGAGAGATTAGCAGCTGAAGATGGAAGCTGTGAGAAAGACACAGAAGTTCGATACTCTGATCAAGCAGTATTGGCAAATTTGGATTGGGGGATTGATGCCCTTGAAGAAGCTATCAATACCTCCAACATGGAAACTAAGCTTGCACGATTAGACCATGCAGAAAAAATGTTACAAGTATGTGCAATGTTGAACTCTGACCAGAGAACTGCAGGAGTCCCCAATTTCTACCTCTCTGCTTGGGCCCATCTCAACCTTTCTTACCTGTGGAGACTGCGGGACAATGTTCACAATTCAGTTCTTCACATTCTCGAGATGTTTATTGTTGATCCTTTCTTCTCACGGATTGATTTTGCTCCAGAGCTCTGGAAAGCTCTGTTTCTTCCACATATGAGTTCAATTGTTGGGTGGTATTCAGAAGCAAGGCACAGGATTGTGATGGAAGTGATTCCTGATTCCACTGATTTGTCCTTTACTGCAGATTTCGATCAATTCTTTAATGAGTCCCTGATCTTTTCCATGAGGCCTGATCAAGCAGAGAAAATGCAAAAGCTGGAGCAACTTTATGGAGAATCATTGGATGAGAATACACGGCTTTATTCAAAATATTATATGGATTGCTTGAACTTTGATTCAAACACTAGCAAGAGAGCGATTCCGATGTTGCCAATTGCAGAGCCACCAATGACTCCAATGCATGAGGTCAGCAGGTCAATTCCCGATTATGTAAAATTTGGGCCCATTCTACCTAAGAGTGCTGGGTTTTCTCTAATTCTTAAAGCTAAGGACAATGCAAGAGAAGCTTGCAGATTGAATGTCACTTCCAAATCCTCACAGAACCTGGAGGAGTCTGTTATGTGGGACCTTCAAGAGGAAACGATTGAGGAAAATGAAGATAATTCAGATTATGAGCCTGATAGTGCTTATATGGATTCTGAGGACAAAACATATCAAGTAGTATCTCATAGTAGCATGAAAATGAACATTTATAAGGAAATGGGGCCAAAAGTACAGCCACCAAAAATTAGGAGTCAACTACCTTCTTCGACAAGTTTTTCTTCCACGGACTCCCCTAAAACTTCTCTAAAGATTTCATCTCCAAAATCAGACTCGCATTGTCATAAAGGTCCCACATCCGTATTGCGCCTCTTATCCAGCCGTGCCATGGATTCCACTGTCTCCACCTCCTTGCCTGTGTCTCCACGTTTGTATAAAGATTCCAGCATTAGCTCAGCAGACTCAGATGGTGAAGTGATTGAGCTACCAAGAAGCTGCAGGAAAAACCATGGACACAATCAAAGTATCAGTCATCAAAATCTGAATAGACAAGTATCAGAAAATAGCTCCCTTAATGAAAATGATGAAGGAAGCCAGAGCTGCATTTCTCTCCCATTATCTGATAAACTGACTCCTAGGTCAAGGCCGCCTAAAGATTTTGTCTGCCCCATCACAGGGCAGATTTTTAGTGATGCAGTTACCCTTGAAACAGGTCAAACATATGAAAGAAAAGCAATTCAAGAATGGCTGAAAAGAGGAAACACAACATGTCCCATTACACGGCAACCTCTATCTGCCAGCTCACTGCCCAAAACAAACTATGTTTTGAAGAGATTAATCACTACTTGGAAAGAACAATATCCTGATGTTGCTCAGGAGTTCTCTTACCCTGAAACACCAAGAAACTCATTCAGCCCCCCGTCCACAAAAGAAATTATGTTGGCATCTTCTCCATCATGTAATCCCCCCGACCATAAGAAGTCAGATGATTGTACTAATCAGAAGTGCAAAAGATTTATGCAAACAGTGGTATCTACTTCACCAACCAGTGTGATATCTCAAGCTGCTACTGAAGCGGTTATCAATGGGTTAAAACCCTATGTTTTGTGTCTCTGTAATTCAGATGATTTACAAGAGTGTGAAGCAGCTGTGCTGGCAATAGCCAAGATGTGGAAAGACTCAAAGGCTGATCCGGGAATTCATTCTTATTTGTCCGAACCAACAATTGTGAATGGGCTTGTGGAAATACTATCAGCTTCCATGAACAGAGAAGTTCTCAGAACATCAATTCACATTCTTTCTGTGCTAATATTTGCTGATGAAAGTGTGGGAGAGACTCTTACCAATGTAGATTCTGATTTTGATTGTCTGGCTGCTCTACTAAAGAAAGGTCTTGCAGAGGCTGCTGTTCTTATATACCAGCTGAGGCCAGCATTCACTCAGCTTTCAGCTCGCAACTTTATACCCTCTCTAGTACACCTAATTCTGAACAAAAATGACGAATCGGATAATCTTCTGTTAGTAATGGAGCCCAAGGATGCTGCTATAGCATTGCTTGAGCAGATTTTGATGGGAGGGGATGAAAACAGCAGATCCCTCAATGCTATGAGTGTTATCTCTGCAAACGGGATTCCTGCATTAATCAAGTGTTTGGATAAGGTAGAAGGAAGGCAGGCCATCGTATCCATCCTTTTATGTTGTATCCATGCAGATAGAAGTTGCAGGAATTTGATAGCAAATAGAATCGATCTGTCTTCCGTGCTTGAATTATTTCATACTGGAGATGATTATGTTAGAGGCATATGCACAAAGTTTCTCTCTGAGCTAGTTCAGTTAAACAGGAGGATATTCTGCAACCAGATCTTGAAGATAATTAAAGATGAAGGAGCTTTTAGTACCATGCACACATTTCTTGTGTATCTACAAATGGCCCCCATGGAGCAGCAACCTGCAATTGCTTCTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCTCGAAAGATGAGCATTTACAGGGAAGAAGCTATAGAGGCACTAGTTGAAGCACTTCACAAAAAAGACTTTCCTCATTCTCAAATCATGGCTCTAGATGCTTTATTATCTCTTTCTGGACATCTGACTACCTCAGGGAAGTCCTACACTGAAGCCTGGTTACTCAAGATCGCAGGATATGATCAACCTTACCATGCTTTAATGAAGTCGGAGAGGCTGAAAATATATGAAAATGAACTGACAGAGACAACGGAAGAGGAAGAGAAAGCTGTCACTTCTTGGCAAAAAAGAGTAGTTTTTGTTCTTTGCAACCATGAAAAAGGATCCATCTTTAAAGCCTTGGAGGAATGCCTGAAGAGTAATTCTTTAGAGATAGCAAAGTCATGCCTTGTTGTTGCCACATGGCTTACATACATGCTTTATCATCTTCCTGACACTGGTGTAAGAAATGTTGCTCACAAGTCATTCCTCGAGCCATTCATCAATGTCCTCCAATCATCAAAGAATCTTGAGGAGAAGATTTTGGCAACCCTTGCTTTGAATTGCTTCCTTAATGATCCAGGTGCATTAGAAGAACTGGGAGCATATGCCAAGTGCATGTATAAAACCTTGAGAAAGCTTAAAAAGAATTCAGTGGTTGTAAGTGACATGCTAAAAGCCTTGATAAAGCTGCCTTCTGTTGATCCAACAGAGTTGTGGTGTTGTGATGAAGTGGTTGAGCTAGATTCATGCTCAAACGGTGGGATTCTGTCTTTGCTTCCTCTAAAAAGTTGGGTTCTGAGCGGCCATTCTGATGGAACTATAAAGGTATGGGATGCTGGGAAGAGAGACTTAAGGTTGATTCAAGAAGTTCGTGAACACACAAAGGCTGTCACATGCCTCTATGCCTCATCTTCAAGTGACAAGTTATATAGTGGTTCCTTAGACAAAACAATTCGGGTCTGGACGGTCAAACCAGAAGAAATTCACTGTGTTCAGGTTCATGATGTGAAGGAGGCGGTATACCAGTTGACAGCTAATGCCAGTTTTGCATGCTTCTCTTCTCAAGGAACTGGAGTCAATGTCTACAGTTGGTCTGGGGTTCCAAAACATATAAACTTTAACAAAAATGTCAAGAGCCTTGACATGGCAGAGGATAGACTGTATTGCGGTTGCACTGGTTACAGCATCCAGGAGGTTGATTTGTGTAAATCCACTACAAATACATTTTACTCTGGTGCAAGAAAATTGCTTGGTAAACAAACAATATATTCCTTGCGGATTCATGATGGTTTACTCTATGCTGGCGGTTCCTCAGTGGATGGAACTGCAGGGAAGGTGTTCTCCCTCTCGACCAAGGCCTTAACTGGGTCTTTCTTGACTGGATTGGACATCCAGCGCTTAGCTGTGAATAGTGACTTTATATTCACTGCCAGTAAATCTGGGATCATTGAGGTGTGGTTTAAGGAAACAGTGACAAGAGTAGCTTCCATTAAAATCGGTGGTCATGGACATGCGAAGATTGCATCCTTGGCATCAGATACAGATGGAGAAATGCTTTTTGCTGGTTTCCTTGATGGCAAGATCCAGGCTTGGGCGCTCGACTGA 4485 0.4185 MAGNYRFAMDQKDIVRFLVTTVGSFIQDQLINKEQRAQHKEQCAERLAAEDGSCEKDTEVRYSDQAVLANLDWGIDALEEAINTSNMETKLARLDHAEKMLQVCAMLNSDQRTAGVPNFYLSAWAHLNLSYLWRLRDNVHNSVLHILEMFIVDPFFSRIDFAPELWKALFLPHMSSIVGWYSEARHRIVMEVIPDSTDLSFTADFDQFFNESLIFSMRPDQAEKMQKLEQLYGESLDENTRLYSKYYMDCLNFDSNTSKRAIPMLPIAEPPMTPMHEVSRSIPDYVKFGPILPKSAGFSLILKAKDNAREACRLNVTSKSSQNLEESVMWDLQEETIEENEDNSDYEPDSAYMDSEDKTYQVVSHSSMKMNIYKEMGPKVQPPKIRSQLPSSTSFSSTDSPKTSLKISSPKSDSHCHKGPTSVLRLLSSRAMDSTVSTSLPVSPRLYKDSSISSADSDGEVIELPRSCRKNHGHNQSISHQNLNRQVSENSSLNENDEGSQSCISLPLSDKLTPRSRPPKDFVCPITGQIFSDAVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSASSLPKTNYVLKRLITTWKEQYPDVAQEFSYPETPRNSFSPPSTKEIMLASSPSCNPPDHKKSDDCTNQKCKRFMQTVVSTSPTSVISQAATEAVINGLKPYVLCLCNSDDLQECEAAVLAIAKMWKDSKADPGIHSYLSEPTIVNGLVEILSASMNREVLRTSIHILSVLIFADESVGETLTNVDSDFDCLAALLKKGLAEAAVLIYQLRPAFTQLSARNFIPSLVHLILNKNDESDNLLLVMEPKDAAIALLEQILMGGDENSRSLNAMSVISANGIPALIKCLDKVEGRQAIVSILLCCIHADRSCRNLIANRIDLSSVLELFHTGDDYVRGICTKFLSELVQLNRRIFCNQILKIIKDEGAFSTMHTFLVYLQMAPMEQQPAIASLLLQLDLLVEPRKMSIYREEAIEALVEALHKKDFPHSQIMALDALLSLSGHLTTSGKSYTEAWLLKIAGYDQPYHALMKSERLKIYENELTETTEEEEKAVTSWQKRVVFVLCNHEKGSIFKALEECLKSNSLEIAKSCLVVATWLTYMLYHLPDTGVRNVAHKSFLEPFINVLQSSKNLEEKILATLALNCFLNDPGALEELGAYAKCMYKTLRKLKKNSVVVSDMLKALIKLPSVDPTELWCCDEVVELDSCSNGGILSLLPLKSWVLSGHSDGTIKVWDAGKRDLRLIQEVREHTKAVTCLYASSSSDKLYSGSLDKTIRVWTVKPEEIHCVQVHDVKEAVYQLTANASFACFSSQGTGVNVYSWSGVPKHINFNKNVKSLDMAEDRLYCGCTGYSIQEVDLCKSTTNTFYSGARKLLGKQTIYSLRIHDGLLYAGGSSVDGTAGKVFSLSTKALTGSFLTGLDIQRLAVNSDFIFTASKSGIIEVWFKETVTRVASIKIGGHGHAKIASLASDTDGEMLFAGFLDGKIQAWALD* 1495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1241 1494 Gene3D - 1209 1373 IPR015943 GO:0005515
Vvi18g1241 1494 Gene3D - 1374 1494 IPR015943 GO:0005515
Vvi18g1241 1494 ProSiteProfiles Trp-Asp (WD) repeats profile. 1250 1284 IPR001680 GO:0005515
Vvi18g1241 1494 Pfam WD domain, G-beta repeat 1217 1238 IPR001680 GO:0005515
Vvi18g1241 1494 Pfam WD domain, G-beta repeat 1246 1281 IPR001680 GO:0005515
Vvi18g1241 1494 SMART WD40_4 1243 1282 IPR001680 GO:0005515
Vvi18g1241 1494 SMART WD40_4 1411 1447 IPR001680 GO:0005515
Vvi18g1241 1494 SMART WD40_4 1450 1492 IPR001680 GO:0005515
Vvi18g1241 1494 SMART WD40_4 1200 1238 IPR001680 GO:0005515
Vvi18g1241 1494 MobiDBLite consensus disorder prediction 435 458 - -
Vvi18g1241 1494 ProSiteProfiles U-box domain profile. 517 592 IPR003613 GO:0004842|GO:0016567
Vvi18g1241 1494 Pfam U-box domain 519 588 IPR003613 GO:0004842|GO:0016567
Vvi18g1241 1494 ProSiteProfiles Trp-Asp (WD) repeats profile. 1225 1238 IPR001680 GO:0005515
Vvi18g1241 1494 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1250 1284 - -
Vvi18g1241 1494 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 1493 - -
Vvi18g1241 1494 MobiDBLite consensus disorder prediction 471 509 - -
Vvi18g1241 1494 SUPERFAMILY RING/U-box 517 590 - -
Vvi18g1241 1494 SUPERFAMILY WD40 repeat-like 1220 1493 IPR036322 GO:0005515
Vvi18g1241 1494 CDD RING-Ubox_PUB 519 571 IPR045210 -
Vvi18g1241 1494 MobiDBLite consensus disorder prediction 470 519 - -
Vvi18g1241 1494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 518 591 IPR013083 -
Vvi18g1241 1494 MobiDBLite consensus disorder prediction 385 416 - -
Vvi18g1241 1494 SUPERFAMILY ARM repeat 668 1166 IPR016024 -
Vvi18g1241 1494 Gene3D - 653 1208 IPR011989 -
Vvi18g1241 1494 MobiDBLite consensus disorder prediction 377 420 - -
Vvi18g1241 1494 SMART Ubox_2 521 585 IPR003613 GO:0004842|GO:0016567
Vvi18g1241 1494 MobiDBLite consensus disorder prediction 435 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1241 Vvi-Chr18 12363552 12370721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1241 509 873 U-box Gene Family AT1G23030 25.538 8.52e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1241 - - vvi:100245471 2914.79