Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1221 ATGGTGATGGATGGCGAGGTCGAAGAAGGCGGAGGAGGACAAGTGGTGGAGACTGGGGAGGAGGAGACTGCTCCCAATGCGTCCAACACTCAAGGGTGCACCTGTGAGGTTCAAGAACTGATGGTCGTGATTGGGTCCATTGTAGCCATTGGAGATTATAGGAGGACGCAGAAGAAGGAGTGCCAAAACCTAGTAAGGCGGTTGAAGTTATTGTTGCCGCTTTTAGAAGATGTAAAGGACCTCCATGGCCAAGTTCCCGAGAAGTCTTTAAATCCATTCTGGAATTTGAAGAAGGCGCTTCTACGTGTCAAGAAACTCTTGATAACTTGCAGTGAGGGAAGCAAGATTTATCTGGCACTTGAGAATGAAGCAGTCATGGCTAGATTTCATCGTGCCAATGAAAAATTAAGTCAAGCTTTGGAAGATTTGCCTTATGAAGAGCTTGGAGTCTCAGAGGAAGTAAAAGAAGAGCTTGATTTAGTGCGCATGCACCTCAAACGATCCAAGAGGCGAACAGACACTCAGGATATTGAACTTGCAATGGATATGATGGTGGTATTCTCAAAAGACGATGAACGGAATGCGGATAGTGCAATAATAGTGAGGCTGGCAAAGAAGCTGGAACTGCTTACAGTTGAGGACTTGAATGCAGAAACAATAGCTGTAAGAAAACTTGTGAAAGAAAGAGGAGGACAAAATGCAGAGAGTACCCAGCATGTGATTGAACTTCTGAATAAATTCAGACAAAGTGGAGGGCTTGAAGAGATCAATGTGCTTGATGATCCCATTGTGCCCAAAACTCTTGAGAAATCCCCATCTTTGGCTATCCCTCATGAGTTCCTCTGCCCAATCACATTAGAAATAATGACTGATCCTGTTTTTGTAGCAACTGGACAGACATATGAAAGAGAAAGCATACAGAAGTGGTTGGACTCCAACCATAAAACCTGTCCAAAGACAATGCAACCTTTGGTTCACTCCTCGCTTGTGCCAAACTATGCCCTCAGAAACCTGATCCTTCAGTGGTGTGAGAACAATAATTTTCAAATTCCCAAAAAGGATGCTTCTTCAAGCACTGAGGGCTCCTCTGAGCAGAAAGAGTCTGTCTTGTCTGTGGTTCAAAACCTATCCTCTAATCAATTGGAAGTGCAGAGAAAAGCAGCGAAGAAGATCCGAATGCTCTCGAAAGAGAATCCAGTGAACCGAGTTCTGATTGCCCAGAGTGGAGGAATCCCACCATTAGTGCAACTCCTGTCCTATCCAGATTCCAAGATTCAAGAGCACACTGTAACAGCTCTGTTGAACTTGTCAATTGATGAGGCCAACAAGAAACTCATTGCTATAGAAGGAGCCATTCCAGCTATAATAGATGTCCTACGGAAAGGAAGCGTTGAGGCTAAAGGGAACTCTGCAGCGGCATTATTCAGTTTGTCGATAGATGATGATATTAAAGCAGCAATCGGGCTCTCTAATGGCATCCCGCCGTTGGTGGATTTGTTGCAGCATGGGACAATCAGAGGCAAAAGGGATGCTGCCACAGCACTCTTTAACCTCTCTCTCAACAAGGCAAATAAGACCAGGGCCATTGAGGCTGGTGTTATTCCACCTTTACTCCAGTTAATTAAGAGCCCAAACTCGGGCATGATTGACGAGGCCCTCTCTATCTTGTTCCTCCTGGCATCACATCCGGACGGGCGGCAAGAGATTGGACAGCTCTCAGTCATTGAAACTCTTGTTGAGTTTATCAGAGATGGGACCACCAAGAACAAAGAATGCGCCACATCGGTTCTTCTTGAGCTGGGGTCTAGCAATTCCTCTTTCATTTTGGCTGCACTTCAGTATGGTGTGTTAGAGCATTTGATTGAGATTACAAAGAGCGGAAACAGCAGAGCCCAAAGGAAAGCTAACTCACTTTTACAGCTCATGAGTCGAATCAGTTTCTTAAGGCAGATGTGTGCAGTGAATATACTTACTTTTGGCAAGAAGTTTTTACGACACATTCTCCCCACTCGTCTCTTTACAGTTGTTTTCTTGATAGAGAACATGTCTGTGTGA 2055 0.4482 MVMDGEVEEGGGGQVVETGEEETAPNASNTQGCTCEVQELMVVIGSIVAIGDYRRTQKKECQNLVRRLKLLLPLLEDVKDLHGQVPEKSLNPFWNLKKALLRVKKLLITCSEGSKIYLALENEAVMARFHRANEKLSQALEDLPYEELGVSEEVKEELDLVRMHLKRSKRRTDTQDIELAMDMMVVFSKDDERNADSAIIVRLAKKLELLTVEDLNAETIAVRKLVKERGGQNAESTQHVIELLNKFRQSGGLEEINVLDDPIVPKTLEKSPSLAIPHEFLCPITLEIMTDPVFVATGQTYERESIQKWLDSNHKTCPKTMQPLVHSSLVPNYALRNLILQWCENNNFQIPKKDASSSTEGSSEQKESVLSVVQNLSSNQLEVQRKAAKKIRMLSKENPVNRVLIAQSGGIPPLVQLLSYPDSKIQEHTVTALLNLSIDEANKKLIAIEGAIPAIIDVLRKGSVEAKGNSAAALFSLSIDDDIKAAIGLSNGIPPLVDLLQHGTIRGKRDAATALFNLSLNKANKTRAIEAGVIPPLLQLIKSPNSGMIDEALSILFLLASHPDGRQEIGQLSVIETLVEFIRDGTTKNKECATSVLLELGSSNSSFILAALQYGVLEHLIEITKSGNSRAQRKANSLLQLMSRISFLRQMCAVNILTFGKKFLRHILPTRLFTVVFLIENMSV* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1221 684 SMART arm_5 562 602 IPR000225 GO:0005515
Vvi18g1221 684 SMART arm_5 480 520 IPR000225 GO:0005515
Vvi18g1221 684 SMART arm_5 604 644 IPR000225 GO:0005515
Vvi18g1221 684 SMART arm_5 398 438 IPR000225 GO:0005515
Vvi18g1221 684 SMART arm_5 439 479 IPR000225 GO:0005515
Vvi18g1221 684 SMART arm_5 521 561 IPR000225 GO:0005515
Vvi18g1221 684 FunFam RING-type E3 ubiquitin transferase 33 146 - -
Vvi18g1221 684 FunFam RING-type E3 ubiquitin transferase 276 347 - -
Vvi18g1221 684 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Vvi18g1221 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 347 IPR013083 -
Vvi18g1221 684 FunFam RING-type E3 ubiquitin transferase 352 647 - -
Vvi18g1221 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 532 569 IPR000225 GO:0005515
Vvi18g1221 684 SUPERFAMILY RING/U-box 273 350 - -
Vvi18g1221 684 Gene3D - 35 146 IPR036537 GO:0007166
Vvi18g1221 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Vvi18g1221 684 Pfam Armadillo/beta-catenin-like repeat 485 519 IPR000225 GO:0005515
Vvi18g1221 684 Pfam Armadillo/beta-catenin-like repeat 398 437 IPR000225 GO:0005515
Vvi18g1221 684 Pfam Armadillo/beta-catenin-like repeat 523 559 IPR000225 GO:0005515
Vvi18g1221 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 491 533 IPR000225 GO:0005515
Vvi18g1221 684 Pfam U-box domain 276 346 IPR003613 GO:0004842|GO:0016567
Vvi18g1221 684 SUPERFAMILY ARM repeat 368 644 IPR016024 -
Vvi18g1221 684 Gene3D - 348 670 IPR011989 -
Vvi18g1221 684 PANTHER U BOX DOMAIN-CONTAINING 58 643 - -
Vvi18g1221 684 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Vvi18g1221 684 MobiDBLite consensus disorder prediction 1 30 - -
Vvi18g1221 684 CDD RING-Ubox_PUB 277 329 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1221 Vvi-Chr18 12216225 12219253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1221 37 644 U-box Gene Family AT5G42340 64.145 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1221 - - vvi:100245355 1181.01