Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1220 ATGGTCGGAACAGATGAGAATAACCCAGGTGTGGGTGTGATCGGACCAGCAAATAATCAAGGAGGTTTACGTGCCGGAGTTGGGAAATTCACCACTGGGATCGGGCACAACCGAAGAGCTTTGAGCAGCATTGACCGGAATATAATCGGAGTTCCTCCTTACCCTTGTGCAGTAAACAAAAGGGCTTTGTCTGAAAAAGAAGCAGCCTGTGATAAGAAACACCCACCAATTCCGATGCATCGACCCATTACTAGGAAGTTCGCTGCACAAATGGCTAGCAACAAGCAGCAGCGAGCAGCTATACCTGAGGAATCAAGGAAATTGGTCCTACAGTCAGCACCTAGTGAATTAAAGGATTGTGTCTTTGTTGATGCGGAAGACTGCAAGGGTACCAGTGACTTACCTGTGCCAATGTCTGTGCAACACACTGAGGCAATGCTAGAGGAAATTGATAGGATGGAGGAGGAGATCGAGATGGAAGATTTGGTGAAAGAGCCTGTGATGGACATAGACGGCTCCGATAACAAGAATTCACTTGCAGTTGTTGAGTACATTGATGAAATATATGCATACTATAGGAAAACAGAGAGTTCTAGCTGTGTCTCACCAGATTATATGTCACAGCAATTTGACATTAATGACAGGATGAGAGGCATCCTTATTGATTGGCTGATTGAGGTGCATTACAAGTTTGAACTGATGGATGAGACATTATATCTTACTGTCAATCTTATTGATAGATTTCTGGCGCTCCAACCAGTGGTGAGGAAGAAGCTCCAGCTGGTTGGTGTCACAGCCATGCTTCTTGCCTGCAAGTATGAGGAAGTGACTGTTCCAATTGTGGAGGATCTCATCTTGATCTCAGACAAGGCTTACAGTAGAAAGGAAGTTCTTGACATGGAGAAATTAATGGTCAATACGTTACAATTTAACATGTCTGTCCCCACGCCATATGTGTTTATGAGAAGGTTTCTGAAAGCTGCCCAATCTGACAAGAAGCTTGAGCTTCTGTCGTTTTTCATAATTGAACTATGCCTGGTGGAGTATGAAATGCTCAAGTTTTCACCTTCTTTGTTAGCGGCTGCAGCAATCTTCACTGCTCAATGTACTCTTAACGGGTCTAAGCATTGGAGCAGGACTTGTGAATGGTACACTAGATACACAGAAGAGCAGCTCTTGGAATGCTCAAGGTTAATGGTTTCTTTCCATCAGCAGGCTGGAACGGGGAAACTCACAGGGGTTCACCGAAAATATAGCACATCCAAGTTTGGACATACTGCAAAATCTGAACCGGCTCACTTTCTTGTAGAGGAGCGACCAAGCTAA 1326 0.4442 MVGTDENNPGVGVIGPANNQGGLRAGVGKFTTGIGHNRRALSSIDRNIIGVPPYPCAVNKRALSEKEAACDKKHPPIPMHRPITRKFAAQMASNKQQRAAIPEESRKLVLQSAPSELKDCVFVDAEDCKGTSDLPVPMSVQHTEAMLEEIDRMEEEIEMEDLVKEPVMDIDGSDNKNSLAVVEYIDEIYAYYRKTESSSCVSPDYMSQQFDINDRMRGILIDWLIEVHYKFELMDETLYLTVNLIDRFLALQPVVRKKLQLVGVTAMLLACKYEEVTVPIVEDLILISDKAYSRKEVLDMEKLMVNTLQFNMSVPTPYVFMRRFLKAAQSDKKLELLSFFIIELCLVEYEMLKFSPSLLAAAAIFTAQCTLNGSKHWSRTCEWYTRYTEEQLLECSRLMVSFHQQAGTGKLTGVHRKYSTSKFGHTAKSEPAHFLVEERPS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1220 441 ProSitePatterns Cyclins signature. 217 248 IPR006671 -
Vvi18g1220 441 Gene3D - 187 427 - -
Vvi18g1220 441 SMART Cyclin_C_2 315 432 IPR004367 -
Vvi18g1220 441 PANTHER CYCLINS 145 418 IPR039361 -
Vvi18g1220 441 Pfam Cyclin, N-terminal domain 187 313 IPR006671 -
Vvi18g1220 441 SUPERFAMILY Cyclin-like 176 312 IPR036915 -
Vvi18g1220 441 Gene3D - 201 313 - -
Vvi18g1220 441 SUPERFAMILY Cyclin-like 314 432 IPR036915 -
Vvi18g1220 441 CDD CYCLIN_AtCycB-like_rpt1 164 310 - -
Vvi18g1220 441 PIRSF Cyclin_A_B_D_E 31 441 IPR046965 GO:0016538|GO:0044772
Vvi18g1220 441 CDD CYCLIN_AtCycB-like_rpt2 315 431 - -
Vvi18g1220 441 FunFam G2/mitotic-specific cyclin-1 299 427 - -
Vvi18g1220 441 Pfam Cyclin, C-terminal domain 315 430 IPR004367 -
Vvi18g1220 441 SMART cyclin_7 319 401 IPR013763 -
Vvi18g1220 441 SMART cyclin_7 222 306 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1220 Vvi-Chr18 12212398 12214785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1220 1 436 Core Cell Cycle Gene Families AT1G20610 63.781 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1220 K21777 - vvi:100267672 858.596