Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1216 ATGAAAGAGAGAGGTAGCTCAGCAACACTTCTCTTCTTCTATCTCCTGGGATTACTTTTCATGGCTCTCCTCACTTTCTTACCAGAAGCATCAGAGACCAATACCAAAAAGCAACAGCCTTCAAAGCGGAAGCGAAAGCAGCAAAAGCAGCCATCATCTTGGAACCAAATCAAGAACCTACTCACCTGTAAGCAGATCGAAGGGTCGCAAGTTCACGATCCCTCTAAGAACCCAGGTGGGTACTCCAAGTTGGGGTCTTCTTGCGGTTCCATATGCAGTTTCAGAGACGTTGTTCACGGCAACACTAGGGTGGTTCACAGAGCTGACAACTCACCGGAAAGTAGCTCGGTGGGTCAGGAGACTGGGCTTCTGAGTAGGAAAACTGTGAGTGGGTCGACGTCGTCGACTCGGTCTCTATCAAGTTCAGTGAGATCCAACGCTAGTGCTACCTACACGTCCTCTTCCAGAGGCATGCAATTTAGGAAGCTTTCTGGGTGTTATGAGTGTCACATGATAGTTGATCCAAACAGGTACCCATCTCCAAGAACAACTATATGTGCTTGCTCTGAGTGTGGAGAGGTTTTTCCAAAGACTGAAAGCTTAGAGCTTCATCAAGCAGTTCGCCATGCCGTTTCGGAGCTGGGTCCGGAGGATTCGGGTCGGAACATCGTGGAGATCATCTTTAAATCGAGCTGGTTGAAGAAAGACAATCCAATCTGCAAGATCGAACGGATACTAAAAGTCCACAACACCCAGAGGACCATCCAACGGTTCGAGGAATGCCGAGACGCGGTGAAGGTCCGTGCGAACAATAACACCAAGAAAAACCCGCGCTGTGCCGCGGACGGAAACGAGCTGCTGCGGTTCCATTGCACCACCTTAACCTGCGCTCTCGGCTCACGTGGCTCCTCCAGCCTATGCGGCTCCGTACCGGGCTGCGGAGTATGCACCATCATCAGGCACGGATTCCAAGGCAAGGCAGGTGAGGCAAAAGGTGTGCGCACCACTGACAGCAGCGGTCGGGCCCACGACTGCCTACCGTGTACGGACGGTCGCAGGGCCATGTTGGTGTGCCGCGTGATCGCCGGAAGGGTGAAGCGCATGGCGGACGATGCGCCGGATGAGGATGGCGCCTCGGCTGGCTCCTACGACTCAGTAGCCGGCTACTCCGGGATTTACTCGAATCTGGAGGATTTGTTCGTATTCAATCCCAGGGCCATTCTTCCTTGCTTTGTAGTGATCTACAAAGCTCTTGATTGA 1260 0.527 MKERGSSATLLFFYLLGLLFMALLTFLPEASETNTKKQQPSKRKRKQQKQPSSWNQIKNLLTCKQIEGSQVHDPSKNPGGYSKLGSSCGSICSFRDVVHGNTRVVHRADNSPESSSVGQETGLLSRKTVSGSTSSTRSLSSSVRSNASATYTSSSRGMQFRKLSGCYECHMIVDPNRYPSPRTTICACSECGEVFPKTESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKKDNPICKIERILKVHNTQRTIQRFEECRDAVKVRANNNTKKNPRCAADGNELLRFHCTTLTCALGSRGSSSLCGSVPGCGVCTIIRHGFQGKAGEAKGVRTTDSSGRAHDCLPCTDGRRAMLVCRVIAGRVKRMADDAPDEDGASAGSYDSVAGYSGIYSNLEDLFVFNPRAILPCFVVIYKALD* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1216 419 ProSitePatterns Zinc finger C2H2 type domain signature. 186 209 IPR013087 -
Vvi18g1216 419 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 214 IPR013087 -
Vvi18g1216 419 MobiDBLite consensus disorder prediction 105 151 - -
Vvi18g1216 419 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 52 415 - -
Vvi18g1216 419 MobiDBLite consensus disorder prediction 31 54 - -
Vvi18g1216 419 Gene3D - 210 417 - -
Vvi18g1216 419 MobiDBLite consensus disorder prediction 107 151 - -
Vvi18g1216 419 FunFam C2H2-like zinc finger protein 210 416 - -
Vvi18g1216 419 SUPERFAMILY ADP-ribosylation 211 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1216 Vvi-Chr18 12179640 12181575 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1216 21 419 C2H2 Transcription Factor Family AT1G75710 64.378 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g1216 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1216 - - vvi:100250572 768.844