Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1214 ATGGCTGTGTGGGGCGATGATCCAAGCCTTTCCAATCAACAATCTCGATTTCAATCCGACACTCGGAATCCGTCTCTGAATCCTTTCTTCCCTTCCTCTCAGCGGAAGCCTCATCTTTTCCCTTTCTTTTCTTGTCCAATGAACGACTCCTCTTTCGTCTCTGATACTCGTACGCACTGCCATAGCGACGACCGACAGTCTGCTTTTGTCAAGCTTCCGTTGAAGCAAACAAATGAAATAGACCATTGCAAGGGTCAGACTAGTAGACAAGCCACTCTTGATGGACATGGTGAAGAAATGAAATTTCCTTCCCTTGAACCAGAGTCTTGTGTGGGTGGTAAGCAGCAACACAGTAAATCAAAGGTGTCAAAAAATGCCAAATCTGGAGCTCAAAGATCAAATGCTGAGTCCCCGAATATTCTGAATCCAGTTGTTACTTGCCGTTATGACAGTTCACTAGGCTTGTTAACAAAGAAATTCATTAGTTTGATCCAGGAGGCTAAGGATGGGACCCTTGATCTAAACCGTACTGCAGATGTCTTGGAGGTCCAAAAGAGGAGAATATATGATATTACAAATGTTCTTGAAGGAATAGGATTGATTGAGAAAACTTCAAAGAACCATATTAGCTGGAAGGGATTTGACATGTCTGGGCCACAGAAGATGGATAATGAAGTCACGAGATTGAAGGCTGAAGTTGAAAGGTTATATGCTGAAGAATGTAGACTTGATGATTGCATAAGGGAAAAGCAGGAGCTTCTAAGGGCCATAGCTGGAGATGAAAATTGTCAAAAGCACCTCTTTTTGACAGAAGAAGATATTACAACACTTCCTTGCTTCCAGAATCAAACACTAATTGCAATAAAGGCTCCTCAAGCCAGTTCTGTTGAAGTTCCTGATCCTGATGAGGATATTGGTTTCTCACAAAGGCAGTTTAGAATCATTATCAGAAGCACCACAGGACCAATTGATTTATACTTGTTGAGCAAATATGAAGGCCAATCTGAGGATATAACAGTCAGGAGAACTAAATCACTGGATTATTCTGTGGAGGATAGTGGCTGCAACAAACTTCAGGATGCAGGTCCGTTCAGCTCACTGGGCTCAGAGGGATCTGGGATTCAGAAGATTATCCCATCAGACTTTAAAATAGATGATGATTATTGGCTTCGATCAGATCCTGAAGTCAGCATTACAGATCTGTGGGCAAATGAGGATTGGGCCCAAGAAAATGACATCTTTCAAGAGGATTCCATAACGAGTGATGCATCCTTAGCTCAGACTCAACCATCACTAAGGGGGAGTCTGAGTGAACCGGACAAGAACCAGGCAGTTGGTTGCTCAGGTTGA 1350 0.4281 MAVWGDDPSLSNQQSRFQSDTRNPSLNPFFPSSQRKPHLFPFFSCPMNDSSFVSDTRTHCHSDDRQSAFVKLPLKQTNEIDHCKGQTSRQATLDGHGEEMKFPSLEPESCVGGKQQHSKSKVSKNAKSGAQRSNAESPNILNPVVTCRYDSSLGLLTKKFISLIQEAKDGTLDLNRTADVLEVQKRRIYDITNVLEGIGLIEKTSKNHISWKGFDMSGPQKMDNEVTRLKAEVERLYAEECRLDDCIREKQELLRAIAGDENCQKHLFLTEEDITTLPCFQNQTLIAIKAPQASSVEVPDPDEDIGFSQRQFRIIIRSTTGPIDLYLLSKYEGQSEDITVRRTKSLDYSVEDSGCNKLQDAGPFSSLGSEGSGIQKIIPSDFKIDDDYWLRSDPEVSITDLWANEDWAQENDIFQEDSITSDASLAQTQPSLRGSLSEPDKNQAVGCSG* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1214 449 PANTHER TRANSCRIPTION FACTOR E2F 107 408 IPR015633 GO:0000978|GO:0006357
Vvi18g1214 449 SUPERFAMILY E2F-DP heterodimerization region 225 330 IPR037241 -
Vvi18g1214 449 MobiDBLite consensus disorder prediction 98 137 - -
Vvi18g1214 449 MobiDBLite consensus disorder prediction 425 449 - -
Vvi18g1214 449 Gene3D - 143 215 IPR036388 -
Vvi18g1214 449 MobiDBLite consensus disorder prediction 7 31 - -
Vvi18g1214 449 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Vvi18g1214 449 Gene3D - 220 330 - -
Vvi18g1214 449 MobiDBLite consensus disorder prediction 111 137 - -
Vvi18g1214 449 MobiDBLite consensus disorder prediction 1 31 - -
Vvi18g1214 449 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Vvi18g1214 449 FunFam E2F transcription factor 1 142 215 - -
Vvi18g1214 449 Pfam E2F transcription factor CC-MB domain 229 328 IPR032198 GO:0046983
Vvi18g1214 449 CDD E2F_DD 224 331 IPR032198 GO:0046983
Vvi18g1214 449 SUPERFAMILY "Winged helix" DNA-binding domain 148 211 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1214 Vvi-Chr18 12152154 12158302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1214 114 404 E2F-DP Transcription Factor Family AT1G47870 54.762 1.35e-99 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vvi18g1214 E2F_CC-MB 1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1214 K06620 - vvi:100247139 909.827