Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1204 ATGAAACTGCAACCTCTTGCCAAAAACCGGTTAGCAGCAGCAACGGCAGATGTTCCAAAAGGCTATTTTGCGGTTTATGTTGGGGAGAATCAGAAGCAGCGGTTTGTGGTTCCGATATCTTACTTGAACCATCCTTCGTTTCAGGACTTGTTAAGTCAGGCTGAGGAAGAGTTTGGGTTCGACCATCCCATGGGTGGTCTCACCATTCCCTGCAAAATAGCCAACTTCATAGAACTCACTTCTCGCTTGCAGGTGAATAACCTGTGA 267 0.4682 MKLQPLAKNRLAAATADVPKGYFAVYVGENQKQRFVVPISYLNHPSFQDLLSQAEEEFGFDHPMGGLTIPCKIANFIELTSRLQVNNL* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1204 88 Pfam Auxin responsive protein 12 82 IPR003676 GO:0009733
Vvi18g1204 88 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 14 83 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1204 Vvi-Chr18 12003014 12003280 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1204 17 76 Calmodulin-binding Proteins AT3G43120 56.667 3.91e-19 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1204 K14488 - vvi:100245466 180.259