Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1202 ATGGCTCTCGGGAAATCAAATAAACTATCTCAAACAGCAGTTCTCAAGCAAATTCTCAAGAGATGCTCCAGCTTGGGAAAGAAACAAGGTTATGACCAAGAGGGGCTTCCACTTGATGTTCCGAAAGGCCACTTTGCAGTATACGTTGGTGAAAATAGAACAAGATACATTGTCCCGATCTCCTTCTTGACACGTCCTGAGTTTCAAAGCTTGCTTCAGCAAGCTGAGGAAGAGTTCGGTTTCGATCACGAGATGGGCCTCACAATTCCATGTGAAGAAGTTGTTTTTCAGTCTTTAACGTCCATGCTCAGATGA 315 0.4381 MALGKSNKLSQTAVLKQILKRCSSLGKKQGYDQEGLPLDVPKGHFAVYVGENRTRYIVPISFLTRPEFQSLLQQAEEEFGFDHEMGLTIPCEEVVFQSLTSMLR* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1202 104 Pfam Auxin responsive protein 27 103 IPR003676 GO:0009733
Vvi18g1202 104 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 38 102 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1202 Vvi-Chr18 11987605 11987919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1202 3 103 Calmodulin-binding Proteins AT4G34750 38.614 2.54e-21 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1202 K14488 - vvi:100247221 209.92