Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1200 ATGTCAGTTGGCTTTGGAAAATGCAGCAAAATCCGGCACATTGTCCGACTCCGGCAAATGCTCCGGCGGTGGCGCCACAAAGCAGCAGAGGCCTCCCGCATGTCATCCAGTTGCATTCCCTCCGATGTTCCCGCCGGCCACGTCGCCGTTTGCGTCGGCACCGATGGGAAAAGATTCGTGGTTCGTGCCACCTACTTGAACCACCCCGTCTTCAAGAAACTCCTAGTGGAAGCTGAAGAAGAGTACGGATTCACCAACCAAGGTCCCCTTTCACTTCCGTGCGACGAGTCAGTCTTTGAAGAGATCCTCTGCTTCATATCACGGTCCGAAGCCAGCAACTCAGCGCGTTTCGTCAATCGTGAAGATTTTCAGAGATATTGCCACGTAGGCATCAGAAGTAGTCTGGACTTCTGGCCCGAATCTCGACCGCTTCTTCATAGTAAAAGCATTTGGTAA 456 0.5285 MSVGFGKCSKIRHIVRLRQMLRRWRHKAAEASRMSSSCIPSDVPAGHVAVCVGTDGKRFVVRATYLNHPVFKKLLVEAEEEYGFTNQGPLSLPCDESVFEEILCFISRSEASNSARFVNREDFQRYCHVGIRSSLDFWPESRPLLHSKSIW* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1200 151 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 29 102 IPR003676 GO:0009733
Vvi18g1200 151 Pfam Auxin responsive protein 16 106 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1200 Vvi-Chr18 11959701 11960156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1200 5 145 Calmodulin-binding Proteins AT4G34750 51.370 2.17e-44 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1200 K14488 - vvi:100242084 313.923