Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1197 ATGATGAGCTCTGTTGAGGAGAACATCAAAGCCGGAGGCCTGGTTAGTGGGACACAAACAACTCTAATTGAAGAGATGAAGTTGTTGAAAGAAATGCAGGATCAATCTGGGCCCCGAAAGGCCATAAATTCTGAGCTATGGCATGCCTGTGCCGGCCCACTTGTTTCCTTGCCTCAGGTGGGAAGCCTTGTGTATTACTTCCCTCAAGGACATAGTGAACAGGTGGCAGTTTCAACTAAAAGAACCGCAACCTCGCAAATCCCTAACTATCCAAACCTCCCATCTCAATTAATGTGCCAAGTTCACAATGTTACGCTACATGCAGACAAAGATACAGATGAAATCTATGCTCAAATGAGTCTTCAACCGGTGAACTCTGAAAAAGATATTTTTCCTATACCAGATTTTGGACTCAAGCCCAGCAAGCATCCAAGTGAGTTTTTCTGCAAAACTTTGACTGCAAGTGATACAAGCACGCATGGTGGCTTCTCAGTGCCCCGCAGAGCAGCAGAAAAGCTCTTCCCACCACTGGATTACTCAATGCAACCTCCAACTCAGGAGCTCATTGTTCGAGATTTGCATGATATTACCTATACATTTCGTCACATATACCGTGGGCAACCAAAGCGGCACCTTTTAACAACTGGTTGGAGTGTGTTTGTTAGTGCAAAAAGACTTAGAGCAGGTGATGCTGTCCTATTTATCAGAGATGAGAAATCACAGCTATTGCTTGGTGTGAGGCGTGCAAACCGTCAGCAAACATCATTGCCATCATCAGTTCTGTCCGCTGATAGCATGCATATTGGAGTTCTTGCAGCTGCAGCTCATGCTGCGGCCAACCGAAGCCCATTTACCATTTTCTACAATCCCAGGGCATGCCCATCAGAATTTGTTATTCCTTTGGCCAAGTACCGAAAATCTGTATATGGAACCCAAATTTCTGTTGGTATGAGGTTTGGAATGATGTTTGAGACAGAGGAATCGGGGAAGCGCAGATACATGGGTACGATAGTTGGTATAAGTGACCTAGATCCACTGAGCTGGCCAGGTTCCAAGTGGCGTAATCTTCAGGTTGAGTGGGATGAGTCGGGATGTGGTGATAAGCAGAGCAGGGTTAGTTCATGGGAAATTGAGACTCCTGAAAGCCTTTTCATTTTTCCTTCCCTGACATCAAGTCTCAAACGACCTATGCATGCTGGTTTCTTGGGAGGTGAAGCTGAATGGGGAAGTTTGATGAAAAGGCCATTTATCCGTGTTCTTGAAAATGGGAATGGGGTTCTTCCGTACCCCACAATTCCAAATATATGTTCTGAGCAATTGATGAAGATGCTACTGAAACCTCAACTTGTTAACCCTCCTGGTACTCTTACACCTGCATTCCAAGACTCTGGTGTGAAGGCAGCTTCATTACAAGAGGCAAGAATTATAGAGGGAATGATTAAGCAGCAACCTCCGCCTATTCCTTCAGAAAATAAATTGCTGCAAAATCAAAATCATCCTCAGCCCTGCCTCGATCAACCTGATGCAACAAACTCTGATTTACCATCACAACCAAATCTAGTAGGACAAGTGCAACCTCTGAACAAATTGGAAAATCAAACACCATCTGGAAATGCTGAAAAATCGAACATAGAACCTGTGCATACAGCAGATCAGTTAAGCCAGTTGACCTCTACTGGACAGGGTGATGAGGAAAAGCTAGCTAAGAGCCCTAAGAATCCACAGAACCTTGTAAACCAACCATCATTGTCTAATCAGAACAAAGATCCATTGCAATTGCAGACTAATTCTTTCATGCAACCCCATTTGGAATCCTCAATTTTCCATGCCCAGCAAATTTCTGCACCCCCATTTGATTCTAATCCAAATGCCTTATCTCCATACATAGACACCGATGAATGGATTTTGTACCCTTCTGCAAACCAATCTTTTGGTGGGGTTCTGAGATCACCTGGGCCTTTATCTACATTTAGTCTGCAAGATCCTTCGGTGGTGTTTCCAGAAGCAATTAACCCAACTCTTCCTTCAATGGGTCAGGAAATATGGGATCATCAACTGAACAATGCAAAATGTTTATCCCAAGCAGATCAACTCCCTCCATTCCCTCAGCAAGATCCATGTAGCCTTAATTGTATATCTAGTTCAAGTGGTTTAAGAGACTTGTCAGATGATAGCAATAACCAAAGTGGGATCTACAGTTGTCTTAATTTTGATGTTAGTAATGGTGGAAGTACTGTGGTTGACCCTTCTGTTTCAAGCACCATTTTGGATGAGTTCTGTACATTTAAGGATGCTGATTTCCCAGATCCTTCAGATTGTTTAGTAGGCAACTTCAGTACAAGCCAGGATGTTCAGTCCCAGATTACCTCAGTGAGCTTAGCAGACTCTCAGGCCTTCTCTCGTCCAGACTTCCTTGACAACTCAGGTGGTACTTCATCAAGCAATGTGGATTTTGATGAAAGCAGTCTTTTGCAGAATAGCTCTTGGCAACAAGTAGCTCCACCACCAATGCGAACTTATACAAAGGTTCAAAAAATGGGATCAGTTGGGAGGTCAATTGACGTTGCAAGTTTTAAGAATTATGAAGAATTATGCTCAGCAATTGAATGCATGTTTGGACTTGAGGGTCTGCTCAACGACCAGAAAGGCTCAGGCTGGAAATTGGTGTATGTGGATTATGAGAATGATGTACTTCTTGTTGGGGATGATCCCTGGAAGGAGTTTGTTGGCTGTGTCCGCTGCATTAGAATTTTGTCGCCTTCTGAAGTTCAGCAGATGAGTGAAGAGGGCATGCAGCTTCTCAATAGCACAGCAATTGAAGGGATTAATGATTCTATCAGAAGGTGA 2847 0.4359 MMSSVEENIKAGGLVSGTQTTLIEEMKLLKEMQDQSGPRKAINSELWHACAGPLVSLPQVGSLVYYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVHNVTLHADKDTDEIYAQMSLQPVNSEKDIFPIPDFGLKPSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSMQPPTQELIVRDLHDITYTFRHIYRGQPKRHLLTTGWSVFVSAKRLRAGDAVLFIRDEKSQLLLGVRRANRQQTSLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKSVYGTQISVGMRFGMMFETEESGKRRYMGTIVGISDLDPLSWPGSKWRNLQVEWDESGCGDKQSRVSSWEIETPESLFIFPSLTSSLKRPMHAGFLGGEAEWGSLMKRPFIRVLENGNGVLPYPTIPNICSEQLMKMLLKPQLVNPPGTLTPAFQDSGVKAASLQEARIIEGMIKQQPPPIPSENKLLQNQNHPQPCLDQPDATNSDLPSQPNLVGQVQPLNKLENQTPSGNAEKSNIEPVHTADQLSQLTSTGQGDEEKLAKSPKNPQNLVNQPSLSNQNKDPLQLQTNSFMQPHLESSIFHAQQISAPPFDSNPNALSPYIDTDEWILYPSANQSFGGVLRSPGPLSTFSLQDPSVVFPEAINPTLPSMGQEIWDHQLNNAKCLSQADQLPPFPQQDPCSLNCISSSSGLRDLSDDSNNQSGIYSCLNFDVSNGGSTVVDPSVSSTILDEFCTFKDADFPDPSDCLVGNFSTSQDVQSQITSVSLADSQAFSRPDFLDNSGGTSSSNVDFDESSLLQNSSWQQVAPPPMRTYTKVQKMGSVGRSIDVASFKNYEELCSAIECMFGLEGLLNDQKGSGWKLVYVDYENDVLLVGDDPWKEFVGCVRCIRILSPSEVQQMSEEGMQLLNSTAIEGINDSIRR* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1197 948 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Vvi18g1197 948 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 39 928 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi18g1197 948 FunFam Auxin response factor 312 384 - -
Vvi18g1197 948 ProSiteProfiles PB1 domain profile. 838 922 IPR000270 GO:0005515
Vvi18g1197 948 FunFam Auxin response factor 834 927 - -
Vvi18g1197 948 SUPERFAMILY DNA-binding pseudobarrel domain 135 277 IPR015300 -
Vvi18g1197 948 Gene3D - 312 384 - -
Vvi18g1197 948 Pfam Auxin response factor 274 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi18g1197 948 Pfam AUX/IAA family 837 925 IPR033389 -
Vvi18g1197 948 MobiDBLite consensus disorder prediction 556 590 - -
Vvi18g1197 948 Gene3D - 146 249 IPR015300 -
Vvi18g1197 948 SMART B3_2 148 250 IPR003340 GO:0003677
Vvi18g1197 948 FunFam Auxin response factor 146 250 - -
Vvi18g1197 948 CDD B3_DNA 147 248 IPR003340 GO:0003677
Vvi18g1197 948 Gene3D - 835 927 - -
Vvi18g1197 948 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Vvi18g1197 948 MobiDBLite consensus disorder prediction 572 590 - -
Vvi18g1197 948 MobiDBLite consensus disorder prediction 488 521 - -
Vvi18g1197 948 SUPERFAMILY CAD & PB1 domains 854 917 - -
Vvi18g1197 948 MobiDBLite consensus disorder prediction 482 521 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1197 Vvi-Chr18 11920856 11928775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1197 1 946 B3 DNA Binding Superfamily AT1G19850 60.666 0.0 1067
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi18g1197 AUX_IAA 1.9e-10 CL0072