Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1192 ATGGGCTCCGATGACAACTTGCCGCCTGGCTTTGAAGGAGCTCATCCTGCAAACCAGTTGAAGAATAAGTTGTCCCAGATCCCTCTCATAACATGGAGATGTCCTCCCAAATTTGTGTTGAACTTCACTTGGCAAGTGGTTGCCGGAGAAGAAAGCAATGAGGTGGAGGTTCAAAAGCAGCGGGAGATGAGAGTGCTGGAAGCAGTCTATCCACGCCCATCAGCCATACCTCCAAACCCATCTGTTTCAATTGACGGAGAAGATATGGACAATGATGATCAGAAAATTCTTCTCATCCCCATTGTTCCCGTTGAAGATGAAGAGGCTGCATTGGAAATGTCAGCTGATACAGTGGCACCAATTAACATTCCAATGAGCTCACAATCCCTGCTACTGCCTCCTGGAATTCCATCTGCATCTTCGAGCAATGCACCCAATATACCAAATCCTCCAGCCAATGAAAATGTAGCTGCTGGGATGGTCCCTGGTGTAGAACCTGATGTTGTTGCAGCTGCCTCTGCCGCCTTTACTGCAGTCATGAGAAGCAATGAGCAAGGAAATTTGATTGACCATGACTTGCTCATCAAAATTCTCAGCAACCCAAAAATCATTGAGAGAATTGTTACAGATCAGGTAGTCTCATCCTCCAACCCTCAGGCTGTACCCAACCAAAGGTTGCCACCCATAGCTTTATCTGATCAACCTCCTGGTCATGTCAGTAGGGTAGAAACTAATATACCCTTGTCTGCTGCGATTCCAAGTGGACCATTCTACTCCCAGTCAAATGGGCCTGGACCTGTTCCTGCACCACGGCCACCTCCATCTATGGTTGGACCTTCTTCCTCTTCACCTCCTGTGAGACCTGTAACAAAGGATATCAACTATTATAAGAGCTTGATTCAGCAACATGGAGGAGAAAGGCAAGAACCCCAAGATCAGTCTCAATCCCATTCTCAATTCGCAAACCGACCCAATCACCATGTTTTAGGGATGAATCCGGAGACAGTAGTAACACACCCAAAGCCAAGAGATTCAAAACCCAAGATAATGAAACCTTGCATCTATTTTCACAGTTCGAGGGGATGCCGGCATGGAGCCAACTGTTCCTACCAGCACGATGCGTCTCTCCAGCAGCGTGTGAGCAGCATGCCGGAGGTGCAAAATGCCAAGAGAATGAAAATGGATAGAGAGATCACCGGTACATAG 1206 0.4735 MGSDDNLPPGFEGAHPANQLKNKLSQIPLITWRCPPKFVLNFTWQVVAGEESNEVEVQKQREMRVLEAVYPRPSAIPPNPSVSIDGEDMDNDDQKILLIPIVPVEDEEAALEMSADTVAPINIPMSSQSLLLPPGIPSASSSNAPNIPNPPANENVAAGMVPGVEPDVVAAASAAFTAVMRSNEQGNLIDHDLLIKILSNPKIIERIVTDQVVSSSNPQAVPNQRLPPIALSDQPPGHVSRVETNIPLSAAIPSGPFYSQSNGPGPVPAPRPPPSMVGPSSSSPPVRPVTKDINYYKSLIQQHGGERQEPQDQSQSHSQFANRPNHHVLGMNPETVVTHPKPRDSKPKIMKPCIYFHSSRGCRHGANCSYQHDASLQQRVSSMPEVQNAKRMKMDREITGT* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1192 401 ProSiteProfiles Zinc finger C3H1-type profile. 347 375 IPR000571 GO:0046872
Vvi18g1192 401 MobiDBLite consensus disorder prediction 302 345 - -
Vvi18g1192 401 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 245 396 - -
Vvi18g1192 401 MobiDBLite consensus disorder prediction 263 281 - -
Vvi18g1192 401 MobiDBLite consensus disorder prediction 304 325 - -
Vvi18g1192 401 MobiDBLite consensus disorder prediction 213 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1192 Vvi-Chr18 11890579 11891999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi18g1192 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1192 - - vvi:100266138 721.465