Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1191 ATGGGAAGATCAGCTTCTTGCTTCAAAATCATTTCTTGCGGTGGCGATTCCGTCGGCCAAGATGAGCTCGACCTCGCTGAGCGCAAGGGTTATAGTGATAAACGTGGGTGGAGTTTCCGGAAGAGATCTGCCAGGCATCGAGTTCTAAGCAACACTGTGGTTTCAGAAATTCCTTCTTCTGGGAATAAGGAGAGCCCAGAATCTGCGGCTATTAACTTTCAAACACCAGTTGACTCTACCATACCCGAGAAAACTTCTGTTCCGCAATGGGCAGATGAGAAACCCCAGTTATCGACTTCATTTAACTCAAAAGCATCCGAGACTGTTGTTGCTTCAGAGAATGAAAGTAAGGTTGATGTCAATGTGGATGAGTCTGCTGCTATTGCAATTCAGGCCGCTGTCAGAGGATTCTTGGCTCAAAGAGCACTCCTAAAGCTTAAGAATGTAATCAAGTTGCAAGCTGCTGTCCGGGGGCATTTGGTTCGGAGGCATGCTGTGGGAACCCTACGTGTAGTTCAGGCCATTGTTAAAATCCAAGCTCTTGTTCGTGCTCGCCGAGTTCAAGCAGGGAAGTTAGATGATCGGAAAGATAAACCTAGTTCCAAGCCCATGGAAAAGGAAAATTCATCAGCTGACCCATCTGCAACATACACTTCTATTGACAAGCTTCTTAGCAATGGCTTTGCCCGTCAGCTACTGGAATCAAATCCAAGAACCAAGTCTATCCACATTAAATGTGATCCTTCAAGACCTAATTCTGGATGGCAATGGTTGGAGAGGTGGATGTCTGTCTCATCATCAAATCTTGGACAACCACAGATACCAGTGTTGGAGAAAGAGGAACTGGAACATGAGAGAGTTGAGAATTCTGCTGTCCAAGTAGAAACTGGAATTACATCTGAAACAACCAGTGAGTCTGAAGATTTGAAGTCTAATGTTAGGGAAACAGCAGTGCCATCTGAAAGTGAAGAGAATTTAATCACTTATGATGCAGAGAGCTTTGACTTTCAGACATGCTGCCCTACCTCTTCTTCGGTAAAGGACAATCTTGAGCTACCTCCATCAGAGAATACAGGTGGTACATCACATGCAAAAGACTCCCCATCAGAGATAGATTTGCTCCCAAATCACACGATGCAACCAGAAGAAAAATCTCTAACAGAGTTCAATTCTGTTTCTGGTAAGTCTGAAATGGAAAGTGAACAACCCAAACGTTCTGTTAAAAGGTTTGCCTCTGAACAACTGGAGACTGAAGGGAAGAAGTTTGTATTTGGATCGAGGAAGGTGAGTAATCCTGCATTTGTTGCTGCCCAGTCAAAATTTGAAGAGCTGAGTTCTACAGCCAATTCAGGTAGATTAATCAGTCCTTCCCATCAAGATGTTGGAGTTGAATCAAACATCGAGACAGTTTCATCTGCAGCTGATACCTCAATCACGACAAAGGATCTTAACAGCGAAGATAATTCAATTCCACCTAATTCAAGGCTTCAAGTTGGTGGCTCTGAATGTGGCACTGAACTTTCTATTACTTCTACTCTTGATTCACCTGATATATCCGAAGTTGGAGCCATGGAATTTGACAATGAAGCCAAAGTCTCAGAAGAAGTGATTTGCAATCTCAACAGCACTGGAGGCCTTGATGTTGAATCCAAGGATGTGTCCACCATCGCAGTGTCTAATTTATCTGACACTATGTTGGCTCCACCAGAGAAACGTGATGCTGTTAATGGTGAACCTGTTAATTCAGTTGTAGATGTGGACTCCTCACAGGTAAAGCAGAAGCCAGAGAGAACTGCATCTGATCTGCAGATAGAACTGGACCCTCAGACAGGCCGTCAAGCATACAGGTCATCACCAGAAGCTTCTCCAAGGAGCCACATCACTGTTCCCGAGTCCCAAGGAACACCTTCCAGCCAGGTATCAGTGAAAGCTAAAAGGAGCAAAACTGATAAAAGTGGGTCCAACCAAAAGCGTGCATCTCTGTCAGCAGGTAAGAGATCCCCTTCAAATCCAAACCATGATTCTGGTGCAAGGAGTAGCATGGAACAATTGCCTAAAGATCAGAAAACTGGGAAGAGACGCAATTCTTTTGGTTCAACAAGACCTGATAATGTTGATCAGGAACCGAGAGATAGTAGTAGCAGTAATTCTCTGCCCAGTTACATGCAAGCCACAGAGTCTGCAAGAGCCAAGCTCCATGCAAATAACTCTCCCAGATCAAGTCCAGATGTGCAAGACAAGGACATTTACATCAAGAAGAGGCACTCCCTGCCTGGTGCAAATGGAAGGCAGGGATCTCCTCGCATCCAGAGATCTATGTCTCAAGCTCAGCAGGGTGCAAAGGGAAATAGTGCTAATCCTCCCCATGAGAGAAAGTGGCAGAGGTGA 2388 0.4481 MGRSASCFKIISCGGDSVGQDELDLAERKGYSDKRGWSFRKRSARHRVLSNTVVSEIPSSGNKESPESAAINFQTPVDSTIPEKTSVPQWADEKPQLSTSFNSKASETVVASENESKVDVNVDESAAIAIQAAVRGFLAQRALLKLKNVIKLQAAVRGHLVRRHAVGTLRVVQAIVKIQALVRARRVQAGKLDDRKDKPSSKPMEKENSSADPSATYTSIDKLLSNGFARQLLESNPRTKSIHIKCDPSRPNSGWQWLERWMSVSSSNLGQPQIPVLEKEELEHERVENSAVQVETGITSETTSESEDLKSNVRETAVPSESEENLITYDAESFDFQTCCPTSSSVKDNLELPPSENTGGTSHAKDSPSEIDLLPNHTMQPEEKSLTEFNSVSGKSEMESEQPKRSVKRFASEQLETEGKKFVFGSRKVSNPAFVAAQSKFEELSSTANSGRLISPSHQDVGVESNIETVSSAADTSITTKDLNSEDNSIPPNSRLQVGGSECGTELSITSTLDSPDISEVGAMEFDNEAKVSEEVICNLNSTGGLDVESKDVSTIAVSNLSDTMLAPPEKRDAVNGEPVNSVVDVDSSQVKQKPERTASDLQIELDPQTGRQAYRSSPEASPRSHITVPESQGTPSSQVSVKAKRSKTDKSGSNQKRASLSAGKRSPSNPNHDSGARSSMEQLPKDQKTGKRRNSFGSTRPDNVDQEPRDSSSSNSLPSYMQATESARAKLHANNSPRSSPDVQDKDIYIKKRHSLPGANGRQGSPRIQRSMSQAQQGAKGNSANPPHERKWQR* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1191 795 MobiDBLite consensus disorder prediction 697 743 - -
Vvi18g1191 795 ProSiteProfiles IQ motif profile. 123 151 IPR000048 GO:0005515
Vvi18g1191 795 PANTHER IQ-DOMAIN 5-RELATED 1 765 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 380 397 - -
Vvi18g1191 795 Gene3D - 123 171 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 654 684 - -
Vvi18g1191 795 SMART iq_5 145 166 IPR000048 GO:0005515
Vvi18g1191 795 SMART iq_5 122 144 IPR000048 GO:0005515
Vvi18g1191 795 MobiDBLite consensus disorder prediction 298 323 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 189 205 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 189 215 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 561 795 - -
Vvi18g1191 795 Pfam Protein of unknown function (DUF4005) 702 777 IPR025064 -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 763 784 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 343 412 - -
Vvi18g1191 795 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 187 IPR027417 -
Vvi18g1191 795 Pfam IQ calmodulin-binding motif 125 142 IPR000048 GO:0005515
Vvi18g1191 795 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Vvi18g1191 795 MobiDBLite consensus disorder prediction 602 643 - -
Vvi18g1191 795 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Vvi18g1191 795 MobiDBLite consensus disorder prediction 343 365 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 398 412 - -
Vvi18g1191 795 MobiDBLite consensus disorder prediction 473 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1191 Vvi-Chr18 11862660 11870996 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1191 109 795 IQD Protein Family AT1G19870 39.301 6.58e-113 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1191 - - vvi:100259212 1511.89