Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1189 ATGACAGTGTTGCTTTTTGTCATTCTAGCTTTTCCTCTCTTGCTCTTGTTTCTTCATCGAAAACACAGAAAAAATGGAGGACTACTCCACCTTCCACCGGGTCCTCCTGGGCTTCCCGTCATTGGGAACCTGCACCAGATGGATAACTCAGCCCCTCATCGCTACTTATGGCAACTCTCTAAACAATACGGACCCCTCATGTCCTTGCGCCTCGGCTTCATCCCCACCATAGTGGTTTCTTCCGCCAGAATAGCAAAGGAGGTCATGAAAACACATGATCTTAAATTTGCTAGTAGGCCTTCCTTGATTGGCCCTCGAAGGCTATCTTACAACTGCCTAGATTTGGCCTTTTCACCATACAACGATTATTGGAGAGAAATGAGAAAGATTTGTGTTCTTCATCTCTTCACCTTGAAAAGGGTTCAATCCTATACTCCTATTCGGGAATATGAGGTTTCGCAAATGATTGAAAAAATCTCCAAGTTGGCATCTGCTTCCAAACTTATCAACTTGAGCGAGACAGTGATGTTTCTCACAATCACCATAATCTGTAGGGTTTCTTTCGGCAAGAGGTACGAGGATGAAGGATGTGAAACAAGTAGATTTCATGGACTTCTAAATGATGCTCAGGCTATGTTGGGAAGCTTCTTTTTCTCGGATCATTTTCCTTTGATGGGTTGGCTCGATAAACTCACCGGCCTGACTGCTCGGCTCGAGAAAACTCTCAGGGATATGGATTTGTTCTACCAGGAAATTATCGAAGATCATCTGAAACCAGACAGAAAAAAACAAGAACAAGAGGACATCACTGACGTCTTAATTGAACTGCAGAAGGACAACTCGTTTGCCATTGATATCACTTGGGATCACATTAAAGGAGTGCTCATGAATATATTTGTAGGAGGAACAGATGCAGGCACAGCCACCGTGATTTGGGCGATGACAGCATTAATGAAGAATCCCAGAGTGATGAAGAAAGCCCAAGAAGAAGTGAGAAATACATTTGGAAAGAAGGGATTTATAGGGGAAGATGATGTTGAGAAGCTCCCTTATCTCAAGGCAGTAGTGAAGGAGACGATGAGGCTGCTTCCTGCAGCTCCATTGCTGCTTCCAAGAGAAACACTTCAGAAGTGCAGTATAGATGGGTATGAGATACCACCCAAAACCCTAGTATTTGTGAATGCGTGGGCCATTGGAAGAGATCCGGAGGCCTGGGAAAACCCAGAAGAGTTCATACCGGAGAGATTCTTGGGTTCTTCCGTGGACTTCAGAGGACAAAATTATAAGCTGATACCGTTCGGAGCAGGCCGAAGAGTTTGCCCAGCAATACATATCGGAGCTGTGACAGTGGAGCTCACACTAGCTAATCTTCTTTACTCATTTGACTGGGAAATGCCTGCTGGAATGAACAAGGAAGACATTGACTTTGATGTCATACCTGGTCTTACAATGCACAAGAAGAATGCTCTTTGCCTTATGGCTAAGAAATATAATTAA 1497 0.4402 MTVLLFVILAFPLLLLFLHRKHRKNGGLLHLPPGPPGLPVIGNLHQMDNSAPHRYLWQLSKQYGPLMSLRLGFIPTIVVSSARIAKEVMKTHDLKFASRPSLIGPRRLSYNCLDLAFSPYNDYWREMRKICVLHLFTLKRVQSYTPIREYEVSQMIEKISKLASASKLINLSETVMFLTITIICRVSFGKRYEDEGCETSRFHGLLNDAQAMLGSFFFSDHFPLMGWLDKLTGLTARLEKTLRDMDLFYQEIIEDHLKPDRKKQEQEDITDVLIELQKDNSFAIDITWDHIKGVLMNIFVGGTDAGTATVIWAMTALMKNPRVMKKAQEEVRNTFGKKGFIGEDDVEKLPYLKAVVKETMRLLPAAPLLLPRETLQKCSIDGYEIPPKTLVFVNAWAIGRDPEAWENPEEFIPERFLGSSVDFRGQNYKLIPFGAGRRVCPAIHIGAVTVELTLANLLYSFDWEMPAGMNKEDIDFDVIPGLTMHKKNALCLMAKKYN* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1189 498 Pfam Cytochrome P450 32 490 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 Gene3D Cytochrome P450 17 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 433 442 IPR017972 GO:0005506|GO:0016705
Vvi18g1189 498 PRINTS P450 superfamily signature 301 318 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS P450 superfamily signature 431 440 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 440 463 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 353 371 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 310 336 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 290 307 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 178 196 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 430 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 SUPERFAMILY Cytochrome P450 32 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1189 498 CDD CYP71-like 62 490 - -
Vvi18g1189 498 PANTHER CYTOCHROME P450 71B11-RELATED 15 495 - -
Vvi18g1189 498 FunFam Cytochrome P450 83B1 17 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1189 Vvi-Chr18 11801940 11803508 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1189 15 497 Cytochrome P450 AT4G31500 49.177 1.12e-180 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1189 - - vvi:100250484 961.444