Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1179 ATGGGAAATGAGAAACTTGCTGAGATCGCATTAGTAGACCCCAAGCGTGCCAAAAGTAGAATTCTGGCTAATCGTCAGTCAGCTGCTCGTTCCAAGGAGAGGAAGGTGCGATACATGGCAGAATTGGAACACAAGGTGCACACTCTACAAACAGAGACAACTACGTTATCTCACCTGCTTACTCTCCTACAGAGAGATTCTGCCGAGCTCACTAGTCGGAACAATGAATTGAAACTCCGAATTCAGGCCATGGAACAAGAGGCACAGTTCAGGGATGCTTTGAAGGAGGCATTAACCCTGGAAGTCCATCGTCTACAGCTTCTCGGAACTGCAGAGCCTAGTGGTGGGAAGGTGTTCTTCTCTTCCCTTTGTTTTGTCAGAGACTCTGGACCCAATTAA 399 0.4762 MGNEKLAEIALVDPKRAKSRILANRQSAARSKERKVRYMAELEHKVHTLQTETTTLSHLLTLLQRDSAELTSRNNELKLRIQAMEQEAQFRDALKEALTLEVHRLQLLGTAEPSGGKVFFSSLCFVRDSGPN* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1179 132 Coils Coil 60 87 - -
Vvi18g1179 132 CDD bZIP_plant_RF2 16 50 IPR044759 GO:0003700|GO:0006355
Vvi18g1179 132 Gene3D - 15 67 - -
Vvi18g1179 132 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 14 77 IPR004827 GO:0003700|GO:0006355
Vvi18g1179 132 FunFam probable transcription factor PosF21 14 68 - -
Vvi18g1179 132 Pfam bZIP transcription factor 19 74 IPR004827 GO:0003700|GO:0006355
Vvi18g1179 132 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 113 - -
Vvi18g1179 132 SMART brlzneu 11 76 IPR004827 GO:0003700|GO:0006355
Vvi18g1179 132 SUPERFAMILY Leucine zipper domain 17 67 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1179 Vvi-Chr18 11745491 11746246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1179 1 107 bZIP Transcription Factor Family AT4G38900 72.897 8.55e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g1179 bZIP_1 2.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1179 - - vvi:100264275 230.72