Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1178 ATGGATGAGGGTGGGCATCGTGAAAATGGAAGACACAAAGCAGACCCATATAAAGCAGTTCATAGTCAGTGGTTGATGCAACATCAGCCAACAATGAAACAGATAATGGCTATCATGGCTGAAAGGGATACTGCTGTTCAAGAAAGAAATTTGGCTCTTTCTGAGAAAAAGGCAGCAGTAGCTGAGCGTGATATGGCTTTCCTGCAGCGAGATACAGCAATTGCAGAGCGGAACAATGCCATTATGGAACGAGACAATGCCATTGCAACTCTTCAATATCGCGAGAACTCATTGAATGGTGGCAACATGTCTCCATGCCCACCAGGATGCCAAATCTCGCGTGGGGTGAAGCATATGCACCATCCTCAGCCACACTTACATCATCCAACCCATCTGAGTGAAGCTGCATACAGCGCAAGGGAAATGCATATTGGTGATGCCCTCCCTGTTTCACCTGTTGCTTCTGAGGCTGCAAAATCTCGACGGGCTAAACGACCGAAGGAGGCCAAGCCAATGTCATCTAATAAGAAGGCTTCAAAACCTTTGAAGAAGCCTAAGAGAGAAGGTGAGGACTTGAACAAGATTGTGTTTGGCAAGTCACGTGAGTGGAAGGGTGGGCAGGATATGAGCAGCGGAGGTGATGACCTTAACAAACAGCTAGTTGTCTCAAAATCTGATTGGAAGGGTCAGGACTTAGGGCTAAACCAGGTTACATTTGATGAGTCAACCATGCCAGCACCTGTTTGTTCGTGCACTGGAGTCCTAAGGCAGTGCTACAAATGGGGGAATGGGGGTTGGCAGTCATCATGTTGCACAACCACCTTGTCAATGTATCCCCTACCAGCAGTTCCCAACAAGCGTCATGCTCGAGTTGGTGGGCGGAAGATGAGTGGAAGTGCCTTCAACAAGCTGCTTAGCAGGCTTGCCGCAGAAGGTCATGATCTGTCAATTCCGGTTGATCTCAAGGACCATTGGGCCAAGCATGGAACAAACCGCTATATCACCATCAAGTAG 1014 0.4822 MDEGGHRENGRHKADPYKAVHSQWLMQHQPTMKQIMAIMAERDTAVQERNLALSEKKAAVAERDMAFLQRDTAIAERNNAIMERDNAIATLQYRENSLNGGNMSPCPPGCQISRGVKHMHHPQPHLHHPTHLSEAAYSAREMHIGDALPVSPVASEAAKSRRAKRPKEAKPMSSNKKASKPLKKPKREGEDLNKIVFGKSREWKGGQDMSSGGDDLNKQLVVSKSDWKGQDLGLNQVTFDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSIPVDLKDHWAKHGTNRYITIK* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1178 337 PANTHER - 22 337 IPR010409 -
Vvi18g1178 337 MobiDBLite consensus disorder prediction 158 174 - -
Vvi18g1178 337 Coils Coil 51 71 - -
Vvi18g1178 337 SMART GAGA_bind_2 1 337 IPR010409 -
Vvi18g1178 337 MobiDBLite consensus disorder prediction 149 216 - -
Vvi18g1178 337 Pfam GAGA binding protein-like family 1 337 IPR010409 -
Vvi18g1178 337 MobiDBLite consensus disorder prediction 183 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1178 Vvi-Chr18 11741937 11743126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1178 65 337 BBR or BPC Transcription factor family AT5G42520 67.708 3.40e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vvi18g1178 GAGA_bind 2.5e-110 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1178 - - vvi:100233070 663.685