Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1176 ATGGGTGGGGATCGTGAAATAAGAAGAGAAAAAGTTCATCCTCATGGAACAACTCAGAATCAGTGGTTGATGCAGCCTCAGACAATGGAGCAACTGATGGCCATTCTAGCTGAAAGGGATGCTGCCATCCAAGAAAGAAATTTAGCCCTTTCAGAAAAAAAGGCTGTTTTGGCTCAGCGGGACTTGGCTATTCTGGAGCGAGATGCAGCAATTGTGGAAAGGGATAATGCCCTACTGGAACGAGACAATGTCATTTCAACACTTCGATACAGGGGGAACTCCATGAACAGCTGCAACTGGGGGAAAAGGAAAGAGAATGCATGA 324 0.4599 MGGDREIRREKVHPHGTTQNQWLMQPQTMEQLMAILAERDAAIQERNLALSEKKAVLAQRDLAILERDAAIVERDNALLERDNVISTLRYRGNSMNSCNWGKRKENA* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1176 107 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g1176 107 MobiDBLite consensus disorder prediction 1 15 - -
Vvi18g1176 107 PANTHER - 24 99 IPR010409 -
Vvi18g1176 107 Pfam GAGA binding protein-like family 16 92 IPR010409 -
Vvi18g1176 107 Coils Coil 48 82 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1176 2 96 BBR or BPC Transcription factor family AT2G21240 42.453 7.16e-19 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Vvi18g1176 GAGA_bind 3.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1176 - - vri:117905915 214.542