Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1163 ATGCTAACGGCTATTTTTCTCTACCTCTCCTTGCTTCTCTTCGCCCCAACGCTGACCTGCGCCCAGCGGAGCGCCGATGCCTTGTCTGAAATCAAAGCCTTGACGGCCTTCAAACTCAATCTACACGATCCGCTAGGCGCATTGGACGGCTGGAACTCGTCGACCCCTTCCGCTCCCTGTGACTGGCGGGGCATTCTCTGTTACAATGGCCGAGTTTGGGAACTTCGCTTACCTCGTCTCCAACTCGGTGGCCGACTCACTGACCAACTCTCTAACCTTCGCCAACTTCGCAAGTTAAGTCTTCACTCTAACGCCTTTAACGGCTCTGTTCCTCTTTCTCTCTCCCAGTGCTCTCTTCTACGCGCCGTTTATTTACATTACAACTCATTTTCCGGTGGTCTCCCGCCGGCTCTCACCAACCTCACCAACCTTCAAGTGCTCAATGTTGCCCACAACTTTCTCTCTGGTGGAATCCCCGGGAACCTCCCGAGGAATCTCCGCTATCTCGACCTTTCTTCAAACGCCTTCTCCGGCAATATTCCAGCTAACTTTTCTGTGGCTTCTTCGCTTCAGCTCATCAACCTTTCGTTCAACCAGTTCTCCGGTGGGGTTCCGGCTAGCATCGGAGAGCTTCAACAGCTTCAGTATCTGTGGTTGGACTCGAACCAGTTGTATGGAACCATCCCTTCTGCGATATCCAACTGTTCATCACTCCTACATTTGAGTGCCGAAGACAATGCGCTCAAGGGTCTGATTCCGGCAACGCTCGGAGCGATTCCGAAACTTCGAGTGCTTTCGCTTTCCCGCAATGAACTCTCTGGTTCGGTCCCTGCATCTATGTTCTGCAACGTCTCGGCCAATCCTCCCACGCTAGTGATCGTACAGTTGGGGTTTAATGCCTTCACGGGCATTTTTAAGCCGCAAAACGCAACTTTTTTCAGCGTTTTGGAGGTTTTGGACCTTCAAGAGAATCACATTCATGGTGTGTTCCCATCTTGGTTGACAGAAGTATCCACGCTAAGAATTCTAGATCTTTCTGGAAACTTCTTCTCTGGTGTTCTACCCATTGAAATCGGAAATCTCCTGAGACTGGAGGAGTTGAGAGTTGCTAATAATTCGCTACAGGGTGAGGTTCCTCGTGAGATTCAGAAATGCAGTTTGTTACAGGTTCTTGATCTGGAAGGAAATCGATTTTCAGGTCAACTTCCTCCATTTTTGGGCGCATTAACGAGCTTGAAGACGTTATCTCTAGGGAGAAACCATTTCTCAGGTTCCATTCCAGCAAGTTTTCGGAACCTCTCACAGTTGGAAGTATTGAATCTGAGCGAAAATAACTTGATTGGGGACGTACTCGAAGAGCTATTGCTTCTTAGCAATTTGAGTATCTTAAACCTAAGCTTCAACAAATTTTATGGGGAAGTATGGTCAAATATCGGGGACTTGAGTAGCTTGCAGGAGTTGAACATGAGCGGTTGTGGCTTTTCAGGAAGACTTCCTAAGAGCATTGGAAGTTTGATGAAACTTGCTACTTTGGATTTGAGTAAGCAAAATATGTCTGGTGAATTGCCTTTAGAGATTTTTGGGTTGCCAAATTTGCAAGTTGTTGTTCCGGCTACCTTTGGATTTCTTCAGTCCTTAGTTGTTCTCTCATTGTCTCAAAATCATGTTTCCAGTGTAATTCCATCAGAGCTTGGTAATTGTTCTGATCTGGAAGCACTTGAGCTCCGGTCCAATCGATTGAGCGGTGAAATCCCCGGTGAACTCTCTCGTCTATCCCATTTGAAGGAACTCGATCTGGGTCAGAATAATTTGACAGGTGAAATCCCAGAAGATATATCTAAGTGCTCCTCTATGACTTCCCTGCTGCTGGATGCCAATCATCTTTCAGGCCCCATACCGGATTCGTTGTCTAAATTATCAAATCTAACAATGCTGAATCTGTCTTCAAACAGATTCAGTGGAGTCATTCCAGTGAACTTTTCAGGCATCTCTACCTTGAAATACTTGAACCTTTCACAGAACAACCTGGAAGGAGAAATTCCTAAAATGCTGGGTTCTCAATTTACAGATCCTTCAGTTTTTGCAATGAATCCAAAGTTATGCGGAAAGCCATTGAAAGAGGAATGCGAGGGCGTGACCAAGAGAAAAAGGAGGAAACTGATTCTTTTAGTTTGTGTGGCTGTTGGTGGAGCCACCCTTCTGGCATTGTGTTGTTGTGGCTATATTTTCAGTCTATTGCGTTGGCGTAAGAAACTTAGAGAAGGGGCAGCCGGGGAGAAGAAGCGGAGCCCAGCCCCAAGCTCTGGAGGAGAAAGAGGCCGTGGGAGCGGTGAAAATGGAGGGCCAAAACTCGTTATGTTCAACAACAAAATAACCTACGCGGAAACATTAGAGGCAACCAGACAATTTGACGAGGAAAATGTCTTGAGCAGGGGAAGATATGGACTTGTATTCAAGGCCTCTTTCCAAGATGGCATGGTCCTATCAATCCGCCGCCTTCCAGATGGGTCCATCGAAGAGAACACCTTCCGTAAAGAAGCAGAATCACTGGGCAAAGTGAAGCACAGAAACCTAACAGTCCTACGCGGCTACTATGCAGGACCACCGGACGTCAGGCTCCTCGTTTACGACTACATGCCTAATGGAAATCTGGCCACCCTGCTCCAGGAAGCCTCTCACCAAGATGGGCACGTCCTCAATTGGCCAATGCGCCATCTGATTGCACTTGGCATTGCCCGTGGCCTATCCTTCCTCCACTCAGTTTCAATGGTTCATGGAGATGTGAAGCCACAAAACGTCCTCTTTGATGCGGATTTCGAAGCCCATCTCTCTGATTTCGGGTTAGACCGATTAACCATACCAACCCCGGCTGAACCTTCCTCCTCCACAACCCCAATTGGGTCACTAGGCTATGTTTCACCGGAGGCGGCATTGACCGGAGAAGCTGACGTGTACAGTTTCGGAATCGTATTGCTAGAGATATTGACAGGTAGGAAACCAGTGATGTTCACACAAGACGAAGACATTGTAAAATGGGTGAAAAAACAGTTACAAAGAGGTCAAATTTCAGAATTACTGGAACCGGGGTTGCTGGAAATCGACCCGGAGTCATCTGAATGGGAAGAATTCTTATTGGGGGTGAAAGTTGGGTTGCTATGCACAGCACCCGACCCGCTTGATAGACCCTCCATGTCAGACATCGTATTCATGCTTGAAGGTTGCCGGGTCGGACCAGATATTCCATCCTCAGCTGATCCAACCTCCCTCCCCTCCCCCGTGTGA 3282 0.4771 MLTAIFLYLSLLLFAPTLTCAQRSADALSEIKALTAFKLNLHDPLGALDGWNSSTPSAPCDWRGILCYNGRVWELRLPRLQLGGRLTDQLSNLRQLRKLSLHSNAFNGSVPLSLSQCSLLRAVYLHYNSFSGGLPPALTNLTNLQVLNVAHNFLSGGIPGNLPRNLRYLDLSSNAFSGNIPANFSVASSLQLINLSFNQFSGGVPASIGELQQLQYLWLDSNQLYGTIPSAISNCSSLLHLSAEDNALKGLIPATLGAIPKLRVLSLSRNELSGSVPASMFCNVSANPPTLVIVQLGFNAFTGIFKPQNATFFSVLEVLDLQENHIHGVFPSWLTEVSTLRILDLSGNFFSGVLPIEIGNLLRLEELRVANNSLQGEVPREIQKCSLLQVLDLEGNRFSGQLPPFLGALTSLKTLSLGRNHFSGSIPASFRNLSQLEVLNLSENNLIGDVLEELLLLSNLSILNLSFNKFYGEVWSNIGDLSSLQELNMSGCGFSGRLPKSIGSLMKLATLDLSKQNMSGELPLEIFGLPNLQVVVPATFGFLQSLVVLSLSQNHVSSVIPSELGNCSDLEALELRSNRLSGEIPGELSRLSHLKELDLGQNNLTGEIPEDISKCSSMTSLLLDANHLSGPIPDSLSKLSNLTMLNLSSNRFSGVIPVNFSGISTLKYLNLSQNNLEGEIPKMLGSQFTDPSVFAMNPKLCGKPLKEECEGVTKRKRRKLILLVCVAVGGATLLALCCCGYIFSLLRWRKKLREGAAGEKKRSPAPSSGGERGRGSGENGGPKLVMFNNKITYAETLEATRQFDEENVLSRGRYGLVFKASFQDGMVLSIRRLPDGSIEENTFRKEAESLGKVKHRNLTVLRGYYAGPPDVRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLSFLHSVSMVHGDVKPQNVLFDADFEAHLSDFGLDRLTIPTPAEPSSSTTPIGSLGYVSPEAALTGEADVYSFGIVLLEILTGRKPVMFTQDEDIVKWVKKQLQRGQISELLEPGLLEIDPESSEWEEFLLGVKVGLLCTAPDPLDRPSMSDIVFMLEGCRVGPDIPSSADPTSLPSPV* 1094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1163 1093 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 27 186 - -
Vvi18g1163 1093 Gene3D Ribonuclease Inhibitor 532 586 IPR032675 -
Vvi18g1163 1093 SMART LRR_typ_2 313 336 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 141 165 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 361 385 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 543 567 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 481 505 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 211 235 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 591 615 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 639 662 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 259 283 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 409 432 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 93 117 IPR003591 -
Vvi18g1163 1093 SMART LRR_typ_2 433 458 IPR003591 -
Vvi18g1163 1093 FunFam Probable inactive leucine-rich repeat receptor kinase XIAO 187 283 - -
Vvi18g1163 1093 Gene3D Phosphorylase Kinase; domain 1 781 878 - -
Vvi18g1163 1093 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 588 709 - -
Vvi18g1163 1093 FunFam Receptor-like protein kinase 7 284 529 - -
Vvi18g1163 1093 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 293 1071 - -
Vvi18g1163 1093 SUPERFAMILY Protein kinase-like (PK-like) 782 1081 IPR011009 -
Vvi18g1163 1093 Gene3D Transferase(Phosphotransferase) domain 1 879 1078 - -
Vvi18g1163 1093 MobiDBLite consensus disorder prediction 756 783 - -
Vvi18g1163 1093 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Vvi18g1163 1093 SMART serkin_6 803 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1163 1093 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 879 1079 - -
Vvi18g1163 1093 Gene3D Ribonuclease Inhibitor 184 283 IPR032675 -
Vvi18g1163 1093 Gene3D Ribonuclease Inhibitor 587 710 IPR032675 -
Vvi18g1163 1093 Gene3D Ribonuclease Inhibitor 28 183 IPR032675 -
Vvi18g1163 1093 Pfam Protein kinase domain 805 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1163 1093 Pfam Leucine Rich Repeat 483 505 IPR001611 GO:0005515
Vvi18g1163 1093 Pfam Leucine Rich Repeat 593 615 IPR001611 GO:0005515
Vvi18g1163 1093 SUPERFAMILY RNI-like 222 534 - -
Vvi18g1163 1093 FunFam Leucine-rich repeat protein kinase family protein 539 587 - -
Vvi18g1163 1093 SUPERFAMILY L domain-like 29 304 - -
Vvi18g1163 1093 SUPERFAMILY RNI-like 458 700 - -
Vvi18g1163 1093 ProSiteProfiles Protein kinase domain profile. 803 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1163 1093 Gene3D Ribonuclease Inhibitor 284 531 IPR032675 -
Vvi18g1163 1093 SMART LRR_sd22_2 457 480 - -
Vvi18g1163 1093 SMART LRR_sd22_2 543 564 - -
Vvi18g1163 1093 SMART LRR_sd22_2 211 237 - -
Vvi18g1163 1093 SMART LRR_sd22_2 141 171 - -
Vvi18g1163 1093 SMART LRR_sd22_2 591 614 - -
Vvi18g1163 1093 SMART LRR_sd22_2 409 435 - -
Vvi18g1163 1093 SMART LRR_sd22_2 639 660 - -
Vvi18g1163 1093 FunFam Putative LRR receptor-like serine/threonine-protein kinase 768 878 - -
Vvi18g1163 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 923 935 IPR008271 GO:0004672|GO:0006468
Vvi18g1163 1093 Pfam Leucine rich repeat 617 676 IPR001611 GO:0005515
Vvi18g1163 1093 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515
Vvi18g1163 1093 Pfam Leucine rich repeat 164 224 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1163 Vvi-Chr18 11608623 11612006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1163 6 1093 Receptor kinase-like Gene Family AT4G36180 63.620 0.0 1354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vvi18g1163 Pkinase 7.3e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1163 - - vvi:100262619 2070.43