Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1156 ATGAAGATCCACTGCGACGTCTGTAGTAGAGAAGAAGCGACGGTGTTTTGCACCGCCGACGAGGCAGCTCTCTGCGACGCCTGCGACCACCGGGTCCACCACGCCAACAAGCTCGCCTCCAAGCACCAGCGCTTCTCTCTTCTCCACCCCTCCCCTAAGCAGGTCCCTCTCTGCGACGTATGCCAGGAGAAGAGAGCTTTCCTATTCTGTCAGCAGGACCGAGCAATTCTATGTAGAGACTGCGATCTTCCAATTCACACCGCCAACGAGCACACCCAGAAGCACAACAGGTTCCTTCTCACTGGCATCAAGCTTTCTGCCACTTCTGCGCTCTACTCCTCTACCACCAGCGTCGCAGATTCTGTTTCCGATCACAAGTCTCAGTCCTCTCTCAAGAAGCCCGAGTCGGTGCCTCCTGAGATCTCCCATCCACCGTCCATCACCAAGACTTCATCGCCAACAACCGCCATAAACAGCATAAACAAGGGTGGGGATGCTTCTCTAACAAGTGAAGGTGTTTCAACCAGTAGTATATCAGAGTACTTGATCGAGATGTTACCAGGCTGGCATGTTGAGGATTTTTTGGATTCCACTTCTGCTCCTTCTGGTTTCTGTAAGAGTGCTGGTGATGATGTACTACCTTATCTTCTTGATGCGGATCTTGACAACAATCTGAGTAGCTTCTCGTCAGAAAATTTGGGGGTTTGGGTTCCTCAAGCTCCCACTCCTCTCCATCCTTCTCAATATTCGTCATTCATGGGTGGGCAGATTGGGTTGAAAGAGTCCAAGGAAGCTACAACCATGAAACCCAACAGCAAAAAGTGGGGAGACGATGTTTTTACAGTTCCACAGATCAGCCCTCCATCTGTAGGCTCCAAGAGATCTAGATCTTTCTGGCAGTATCACCACTAA 912 0.5066 MKIHCDVCSREEATVFCTADEAALCDACDHRVHHANKLASKHQRFSLLHPSPKQVPLCDVCQEKRAFLFCQQDRAILCRDCDLPIHTANEHTQKHNRFLLTGIKLSATSALYSSTTSVADSVSDHKSQSSLKKPESVPPEISHPPSITKTSSPTTAINSINKGGDASLTSEGVSTSSISEYLIEMLPGWHVEDFLDSTSAPSGFCKSAGDDVLPYLLDADLDNNLSSFSSENLGVWVPQAPTPLHPSQYSSFMGGQIGLKESKEATTMKPNSKKWGDDVFTVPQISPPSVGSKRSRSFWQYHH* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1156 303 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Vvi18g1156 303 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vvi18g1156 303 Gene3D Classic Zinc Finger 1 99 - -
Vvi18g1156 303 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Vvi18g1156 303 CDD Bbox1_BBX-like 5 47 - -
Vvi18g1156 303 CDD Bbox1_BBX-like 57 100 - -
Vvi18g1156 303 MobiDBLite consensus disorder prediction 268 303 - -
Vvi18g1156 303 FunFam B-box zinc finger protein 21 1 98 - -
Vvi18g1156 303 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vvi18g1156 303 MobiDBLite consensus disorder prediction 123 153 - -
Vvi18g1156 303 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 288 - -
Vvi18g1156 303 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vvi18g1156 303 SMART bboxneu5 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1156 Vvi-Chr18 11546682 11547810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1156 1 299 C2C2-CO-like Transcription Factor Family AT1G75540 52.096 7.79e-102 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vvi18g1156 zf-B_box 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1156 - - vvi:100264386 585.874