Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1152 ATGGCTAGAGGAAAGATTGAGATCAAGAGGATAGAGAACTCGACGAACAGGCAGGTCACCTACTCCAAGAGACGAAATGGTATCTTCAAGAAGGCCAGTGAGCTCACTGTTCTTTGTGATGCTAAGGTTTCTATCATCATGCTCTCCAGTACTGGAAAGCTCCATGAATACATCAGTCCTTCCACTACAACGAAACAAATATTTGATCAGTACCAGAACACTCTAGGAGTGGATCTATGGAGCTATCACTATGAGAGAATGCAAGAAAACCTGAAGAAACTGAAAGATGTGAACAAGAATCTCAGGAAGGAGATTAGGCAGAGGATGGGTGAACATTTGAGCGATTTGAGCGTTGAGGAACTGCGAGATCTTGAACAAGAGATGGAGAGTTCTTTGAAGATGGTTCGTGATAGGAAGTACCAGGTGATCAATAATCAGATTGAAACTTTCAAGAAAAAGGTAAGGAATGTGGAACAAATACACAAAAACCTCCTACATGAATTTGATGCAAGGGACAGAGATCAACACTATGGGCTAGTGGACAATGGAGGGGATTACGAATCTGTTCTTGGATTCTCAAATGGAAGCTCTCCGGTATTTGCCCTAAGCTTGCAGCCTAACCCGCCTAATGATCTTCACTCGGGTGTGGGCTCTGATTTGACCTTTACTTTGCTCGAGTAG 681 0.4317 MARGKIEIKRIENSTNRQVTYSKRRNGIFKKASELTVLCDAKVSIIMLSSTGKLHEYISPSTTTKQIFDQYQNTLGVDLWSYHYERMQENLKKLKDVNKNLRKEIRQRMGEHLSDLSVEELRDLEQEMESSLKMVRDRKYQVINNQIETFKKKVRNVEQIHKNLLHEFDARDRDQHYGLVDNGGDYESVLGFSNGSSPVFALSLQPNPPNDLHSGVGSDLTFTLLE* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1152 226 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Vvi18g1152 226 FunFam MADS-box transcription factor 16 13 97 - -
Vvi18g1152 226 Coils Coil 84 111 - -
Vvi18g1152 226 Coils Coil 140 167 - -
Vvi18g1152 226 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vvi18g1152 226 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1152 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi18g1152 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi18g1152 226 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Vvi18g1152 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi18g1152 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi18g1152 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi18g1152 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi18g1152 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Vvi18g1152 226 Coils Coil 118 138 - -
Vvi18g1152 226 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi18g1152 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1152 Vvi-Chr18 11506619 11512146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1152 1 226 MADS-box Gene Family AT3G54340 60.345 1.36e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi18g1152 K-box 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1152 K09264 - vvi:100233029 439.884