Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1148 ATGGCTGGGTACTTCTCACTAGGTGGGCGAGAGAGGGTGAATCTACGGGAAGAAGGAGAAGAAGAGAAGGTTGTGCACAACCCTGGAAACGAAATCCCCTCGAATAGCTTGTTTTTGTATAGAAACGAGGAGATCTACAACAAGGGTTTCGAGCTATGGCAACAGTACTGTCATCAACGGCTGCATCAACCGCAAAATATAGTATTCTCCTCCTCTGCAACATTCGGAGTCAGCACTCCTAGTGGAAGAACATACAACCTGTCTGATGAGTCGTGTAGATCGGGATTCACGGTGATGAGGCAAGGTGGAGGAGGAGGTGGCATGAATTGCCAGGACTGCGGCAACCAAGCCAAGAAGGACTGCATCCATATGAGATGCAGGACTTGCTGCAAGAGCCGAGGGTTTCCGTGCCCGACCCACGTCAAGAGTACTTGGGTTCCTGCTGCCAAAAGGCGTGAGAGGCAACTACAACTCGCTGCTTTCCAACAACAGCAGCAGCAGCAGCAGCAACAACAGGAACAACAACACCAACAACAGCAGATCCGAGGAGAGAATCAGAAAAGGCAGAGAGAGAATCCAGTTGCTCCCGCTCTAGCTACCACCACGTCAGGGTTGGAAGTGGGACACTTTCCCTCTGAAGTTAATTCTCCGGCCTACTTCCGCTGCGTAAGAGTAAGCGCCATGGATGAGGCAGACGAGCAGTTGGCGTATCAGACTGCTGTTAACATCGGAGGGCATGTTTTCAAGGGAATTCTCTATGATCACGGCCCTGAAAGTCGTTATGGGGGCGAGAGCTCCTCCGGTGGAGGCAGCGGCAGTCAACAACACAATCTTATCACTGCACCCCCCGGCGTAACTACTACAAGCAACCAAGCTACCACATTGCTTGATCCTTCTTTATACCCAGCTCCACTCAACGTTTTCATGGCGGGTACGCAATTCTTCCCACCCCCAAGACCTTAA 963 0.5151 MAGYFSLGGRERVNLREEGEEEKVVHNPGNEIPSNSLFLYRNEEIYNKGFELWQQYCHQRLHQPQNIVFSSSATFGVSTPSGRTYNLSDESCRSGFTVMRQGGGGGGMNCQDCGNQAKKDCIHMRCRTCCKSRGFPCPTHVKSTWVPAAKRRERQLQLAAFQQQQQQQQQQQEQQHQQQQIRGENQKRQRENPVAPALATTTSGLEVGHFPSEVNSPAYFRCVRVSAMDEADEQLAYQTAVNIGGHVFKGILYDHGPESRYGGESSSGGGSGSQQHNLITAPPGVTTTSNQATTLLDPSLYPAPLNVFMAGTQFFPPPRP* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1148 320 MobiDBLite consensus disorder prediction 167 194 - -
Vvi18g1148 320 Coils Coil 159 182 - -
Vvi18g1148 320 NCBIfam LRP1 C-terminal domain 209 257 IPR006511 -
Vvi18g1148 320 Pfam Domain of unknown function (DUF702) 107 258 - -
Vvi18g1148 320 MobiDBLite consensus disorder prediction 258 282 - -
Vvi18g1148 320 MobiDBLite consensus disorder prediction 264 282 - -
Vvi18g1148 320 NCBIfam putative zinc finger domain, LRP1 type 109 151 IPR006510 -
Vvi18g1148 320 MobiDBLite consensus disorder prediction 167 182 - -
Vvi18g1148 320 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 306 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1148 Vvi-Chr18 11486984 11488357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1148 1 319 C2H2 Transcription Factor Family AT1G75520 46.724 3.35e-86 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vvi18g1148 DUF702 4.3e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1148 - - vvi:100260953 558.525