Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1143 ATGGCGGATACTGGCTCAACTTCTTCAAGGAGAATGTGGTGTTCAGTGCCTGAACGAGTCCAGCTGCACCTGGCCATGTTGGCCTTGCAGTTTGGCTATGCCGGATTTCATGTAGTCTCCAGAGCTGCCCTCAACATGGGCATAAGCAAACTCGTGTTTCCAGTTTATAGGAACATTATCGCTTTGCTTCTGCTAGCCCCCTTTGCTTATTTTTTAGAGAAGAAGGAGCGACCAGCACTCACTCTTTCTTTTGTCGTCCAGTTCTTCCTCCTCGCACTAGTTGGAATAACAGCAAACCAAGGATTCTACTTGTTGGGTTTGGACAATACGTCACCCACCTTTGCATCAGCGATACAAAACTCCGTCCCTGCCATTACCTTTCTCATGGCAGCCGTACTTCGCATAGAGCAAGTGCGATTGAATAGAAAGGACGGTCTTGCCAAGGTGCTCGGAACCATCCTCTGTGTTGCTGGAGCTTCGGTTATTACTTTATATAAGGGTCCGACCATATACAGCCCATCTACACGGCCAGACAACACACCCCCACTGTTTCTTTCACTAGGAGATGCAAAGGGCAAAAACTGGACTCTTGGCTGCGTCTATCTCATTGGCCATTGCTTGTCTTGGTCCGCTTGGCTCGTCTTGCAGGCCCCAGTTTTGAAGAAGTACCCGGCTCGCCTCTCTGTTACCTCTTATACCTGCTTCTTTGGCCTTATTCAGTTTTTGATTATAGCTCTTGTTATTGAGAGAAACTCTCAAGCATGGCTTATTCACTCTGGCGCAGAACTCTTCAGCGTCTTCTATGCGGGAGTGGTGGCATCAGGGATCGCATTCGCTGTGCAGATATGGTGCATTGACAGGGGTGGCCCGGTGTTCGTGGCGGTGTACCAACCTGTTCAGACTCTGGTTGTCGCCATTATGGCTTCCGTGGCTTTAGGCGAAGAGTTCTATTTGGGAGGGATCATTGGAGCAGTGTTGATCATATCAGGACTCTACTTCGTGCTCTGGGGCAAAAGCGAAGAGAAGAAGTTTGCCGCCAAGGAGAAGGTCGCGATCCCCTCCACAGCGGAGCACGGAAACGTCAGGACATCAAGCCACATCAAGTCCTCCCTTACTCAGCCACTTCTCCCTCCGTCAACCGAGAGTGTTTGA 1152 0.5009 MADTGSTSSRRMWCSVPERVQLHLAMLALQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLAPFAYFLEKKERPALTLSFVVQFFLLALVGITANQGFYLLGLDNTSPTFASAIQNSVPAITFLMAAVLRIEQVRLNRKDGLAKVLGTILCVAGASVITLYKGPTIYSPSTRPDNTPPLFLSLGDAKGKNWTLGCVYLIGHCLSWSAWLVLQAPVLKKYPARLSVTSYTCFFGLIQFLIIALVIERNSQAWLIHSGAELFSVFYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASVALGEEFYLGGIIGAVLIISGLYFVLWGKSEEKKFAAKEKVAIPSTAEHGNVRTSSHIKSSLTQPLLPPSTESV* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1143 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 56 166 - -
Vvi18g1143 383 Pfam EamA-like transporter family 197 335 IPR000620 GO:0016020
Vvi18g1143 383 Pfam EamA-like transporter family 25 163 IPR000620 GO:0016020
Vvi18g1143 383 SUPERFAMILY Multidrug resistance efflux transporter EmrE 238 339 - -
Vvi18g1143 383 PANTHER WAT1-RELATED PROTEIN 24 348 IPR030184 GO:0016020|GO:0022857
Vvi18g1143 383 MobiDBLite consensus disorder prediction 357 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1143 Vvi-Chr18 11384582 11387082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1143 1 383 Nodulin-like Gene Family AT1G75500 76.726 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1143 - - vvi:100266024 741.88