Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1139 ATGAGAGGCAAAGGTGGTCCAGAGAATGCTATGTGCACTTACAAAGGAGTTCGCCAGAGAACATGGGGCAAATGGGTGGCCGAAATTCGCGAACCCAATCGCGGTGCTCGTCTCTGGTTAGGGACCTTCGACACCTCCTATGAAGCTGCCATCGCTTATGATGCTGCCGCCCGTAAACTCTACGGCCCCGAGGCAAAGCTTAATTTGCCTGAACTATGCGCTCAGCCTCCTGCCAACACTCAATTCACCCATAACCAAATCCCTCCCAATCCAAATATCACACCTCCATCTCTTACCCCTCTACCCCGGCCTAACATCCAAACACCGCCATATCACAAGTACTCAGTGGTCCCCTCTCCTGCTACCCAAGAGGTTCCGCCCCATGCCAAACCAACCGCTATCAACGAGAAAAACGGGGAAAATGATGATGGAATGGAGGGTGTTTGGGCAAACATGAACGTGACCTTGCCTAAGGTTGACGACTCTTTATGGACTGAGACTCTGATGTCAATGGATTTCCCTGCCTTCGATGATACTGAAATTTTCGGGAGCAACCTCGTCGATGGAAACAGCTGGGAAATGTTGCAGTCTCCCTGGCGCACGTGA 606 0.5165 MRGKGGPENAMCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFDTSYEAAIAYDAAARKLYGPEAKLNLPELCAQPPANTQFTHNQIPPNPNITPPSLTPLPRPNIQTPPYHKYSVVPSPATQEVPPHAKPTAINEKNGENDDGMEGVWANMNVTLPKVDDSLWTETLMSMDFPAFDDTEIFGSNLVDGNSWEMLQSPWRT* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1139 201 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Vvi18g1139 201 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vvi18g1139 201 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Vvi18g1139 201 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Vvi18g1139 201 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
Vvi18g1139 201 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 138 - -
Vvi18g1139 201 MobiDBLite consensus disorder prediction 120 141 - -
Vvi18g1139 201 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Vvi18g1139 201 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Vvi18g1139 201 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Vvi18g1139 201 FunFam Ethylene-responsive transcription factor 2 12 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1139 Vvi-Chr18 11347342 11347947 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1139 1 198 AP2-EREBP Transcription Factor Family AT1G75490 46.078 8.05e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi18g1139 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1139 - - vvi:100264271 416.772