Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1123 ATGTCAAACAGTCGAAGAGAAGTCTTGCCAACTTTGAATCTACCGGACCTAAAACTTGCTTCTTATCCTGAACAGCCTCTTCTTCCTGGCAATGTGATGATGTATCCAAACCAGACATCTTCTGCTGGGTCCTACTCAGGGATCTTCATTGGGAGTTCTCCATCTTATCACAACCATGTTGAAGTCCCATCTGCAGGGGTAAGAAATGAGGTGGTATACATTCCACCAACAGGTGATGTCAGTATGCAATCTGTTGGTCTACAGTTAAAAAATGCTACAGGTGCTCCAACTGGCAATTTTGTTACCGGAAATCCTCAGATAGTGCCAAGGACACAGCTAGGCATTCTAGATGCTGAACAGAATTTCCTGCCTCAGCGATTATCTCTCAGCCTCAGCACACAGATACCATCCACAGTTCCACTGGCTTCATTTCAGTACCAGTATGTGAACCCAGGTCTCTCATCACGTTTTGGTTCTTATGTTTCATCTTCAGCGGAGAGAACAATATCTTGTGAAGGTGATGAAAGTTCTCAAGCTAAGGAGTTTAGAAATGATGAATACCTACCATCTAGTTTCCCAGGAACTGATCAGAGTTCTGTCAAAACAGAGGCCTTGTGCAATCCTCGATACTCAGAAATCCCTAAAGTAACTGGTGCTGATCAGTGTCTCTATGAATCTTTTGGTCCTGCAAACACTGTCTTGAACTCCAAATTCCTCAAGTCAGTACAGCAATTGCTTGACGAAGTAGTTAATGTCCGAAAAACTTTGAAGCAGCAGGAGTTTGACAAACACCATAAGTTCCATGGGATTGGTTTAAATGGCTCCAACGAGAATGATGAGAGATCCAATAACCGCACTATACTTTCCTCACCAATTGGGAACTCTTCAGACCCTAATGGGTTGGTTACCAATTCCTCCTGTAAGCTTTCATCCACAGAACGGCAGGATTTGGAGCACAAGAAAGCCAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAAACAGTATTATGATCAGACACAAATTGTGGGATCCTTTTTTGACATGTTAGCTGGGTTTGGGGCGGCAAAAACATACATGGCACTTGCCCTGCAAAGAATTTCCTGCCACTTCCGCTGTTTGCGTGATGCAATCAGTGGCCAGATTCGAATAACCTGCAGAAACCTTGGGGAGCAAGATACTTCACCAAATGGTCTAGGTGGTGGAATGTCTCGTCTTGGCTATGTAGACCAGCAGCTCAGACAACAGAGAGCTCTTCAGCAGTTTGGTGGGATGCGACATGCGTGGAGGCCACAGAGGGGACTGCCTGAAAGTTCTGTTTCAATCCTTCGCACATGGCTGTTTGAGCACTTTCTTCACCCTTATCCAAAGGATTCAGAGAAAATCATGCTAGCTAGGCAGACCGGCTTGACCAGGAGCCAGGTTGCAAACTGGTTTATAAATGCACGGGTGCGTCTTTGGAAGCCCATGGTTGAGGAGATTTATAAAGAAGAGATTGGTGATTCAGAGACAAAGTCTAAATCTTCCCCGGAGAGTCCTCCAAAAGAACCAAGAGATGATTCCTGGGCATCTGAGGATAAGGGAGAAGAGTTGCAAGAAACTATGACATCCACAGCTGCTGCAGGTGGCCACCTGGGTCAATCACATAACATGACGTCTGATTTTATGCGTGATGTGGAAATGAATGGGCCTACGGCAAGAATGAGCTTTCAAAAGGGCGCCCATGGAGATGTGGACACAGATTGTGGGATAATGAAATTACAGGGCGATCAAAGCTCTAATATGGATGACCATAGCCTTTATCTTGATGAGTTTGTTCCAACCAACCAGAATGGTGATGGGAGTCTTATGGCTGCTACATACCACATATCAGAGTTGAGTGACCTAGGAGTTGGCAGTCAGGTGTCACTTGCATTGGGGTTGCGGCATTGTGAAAGCGATGTGCCATCCATTTCTGGGGGGCCCCTTATTAGAGGGGGTGATATTGCTGCTTCTGTGGGCCCTGACACTGCCGAATATAATTGCATGGATTCAGGAAACCAGCGACATAGGTTTGGCAAACCCCATCTCATACATGATTTTGTAGTCTGA 2097 0.454 MSNSRREVLPTLNLPDLKLASYPEQPLLPGNVMMYPNQTSSAGSYSGIFIGSSPSYHNHVEVPSAGVRNEVVYIPPTGDVSMQSVGLQLKNATGAPTGNFVTGNPQIVPRTQLGILDAEQNFLPQRLSLSLSTQIPSTVPLASFQYQYVNPGLSSRFGSYVSSSAERTISCEGDESSQAKEFRNDEYLPSSFPGTDQSSVKTEALCNPRYSEIPKVTGADQCLYESFGPANTVLNSKFLKSVQQLLDEVVNVRKTLKQQEFDKHHKFHGIGLNGSNENDERSNNRTILSSPIGNSSDPNGLVTNSSCKLSSTERQDLEHKKAKLLSMLDEVDKRYKQYYDQTQIVGSFFDMLAGFGAAKTYMALALQRISCHFRCLRDAISGQIRITCRNLGEQDTSPNGLGGGMSRLGYVDQQLRQQRALQQFGGMRHAWRPQRGLPESSVSILRTWLFEHFLHPYPKDSEKIMLARQTGLTRSQVANWFINARVRLWKPMVEEIYKEEIGDSETKSKSSPESPPKEPRDDSWASEDKGEELQETMTSTAAAGGHLGQSHNMTSDFMRDVEMNGPTARMSFQKGAHGDVDTDCGIMKLQGDQSSNMDDHSLYLDEFVPTNQNGDGSLMAATYHISELSDLGVGSQVSLALGLRHCESDVPSISGGPLIRGGDIAASVGPDTAEYNCMDSGNQRHRFGKPHLIHDFVV* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1123 698 Coils Coil 314 334 - -
Vvi18g1123 698 CDD homeodomain 431 492 IPR001356 GO:0003677
Vvi18g1123 698 Gene3D - 428 506 - -
Vvi18g1123 698 MobiDBLite consensus disorder prediction 501 536 - -
Vvi18g1123 698 ProSiteProfiles 'Homeobox' domain profile. 428 491 IPR001356 GO:0003677
Vvi18g1123 698 SMART prehox3 227 382 IPR006563 -
Vvi18g1123 698 Coils Coil 239 259 - -
Vvi18g1123 698 Pfam Associated with HOX 233 381 IPR006563 -
Vvi18g1123 698 Pfam Homeobox KN domain 448 487 IPR008422 GO:0003677|GO:0006355
Vvi18g1123 698 MobiDBLite consensus disorder prediction 501 534 - -
Vvi18g1123 698 SMART HOX_1 431 495 IPR001356 GO:0003677
Vvi18g1123 698 SUPERFAMILY Homeodomain-like 432 497 IPR009057 -
Vvi18g1123 698 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 164 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1123 Vvi-Chr18 11201815 11205287 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1123 183 698 Homeobox Transcription Factor Family AT4G34610 42.557 4.43e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi18g1123 POX 3e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1123 - - vvi:100257488 1334.7