Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1121 ATGGTCTCCCAAGAATCATCCCCCAACCCAACTTCAAGCATTTTGCACCAGTTCATCATCTCTGACTCCTTCACGAGTCCAAACCAATTTGAAAACCATCATTTTGATGCTTATGGATCTCATTTAAGAGGCAGTAACACATTTCCTCAGTCTCTCGGCGTCTTGCCCAGCATTCAGTCTCTCGGAGAAAGAATGTCTAGATCAATAGACCTTGTTCAAGCTCCTGCAGTAGGAGAAGAGTCTGAGATCAGCCACACCAGACACTTCATGGATCTTCTTGGAGCTGCAAATGAGTCCAATCACCAAGCTCACAGGCTCTCGCTCTCCCTAGGCTCTCATGTGCTAATGCCTTCCGTTCATTACAGGCAAAGACCCTTAAACTCAGACTTCGTGAGCTCCAATTACTTATTTTCTGGCGAAGAAGCAAGAGAAGCTTGCAACCCAGGAGTGGAGCGCCTGTGTGATGATTATTCTTATGTGAGTAGCGCCTTTGCTACACCTTCAACCTCGCTCAATCGCTCTTGTTCCACTTCCTATGGAACAGAGTCTTTTGTCAATGCAGTCGGGAACTCAAGATATTTAAGACCAACTCAGTCCCTCCTTGAAGAAGTTGTTAACGCGGGTGGCAAGGCCATTGACTTGAGCAATGAAAAATATATCGGTAGGTTGTCCCGAAGTGGCAGAAGAGGAGCTCTAGGATTTGCTTCTGAGCTAAAAGCAGAATTGTGTGGGAATGGATCATTATCAGCTGAAAAACAAGATATTCAGATAGAAATAGCGAAACTTATTGGCTTGTTGGAGGAGGTTGAGAGCAGATATGAGGAGTACTATCATCAAATGGAAGACGTGGTATCCTCCTTCGAGGTGATAGCAGGTGTGGGAGCAGCCAAGTCTTACACTGCTCTTGCCCTTCAGGCCATGTTTAGACATTTTTGCAGCTTGAGAGATGCCATTATATCTCAAATCAATGTGGCAAGAAGAAAGCTTTCCCATGATTTGCCTAAAATCAGCACAGGATTTTCACAACTTAGCTTGTTTGACCAAGAGGGTAGAAACAACCGAATGACTCTTCAACAGCTGGGAATGTTCCAAAGCCACCGGCAAGCATGGCGACCCATAAGAGGATTGCCGGAGACCTCTGTGGCTATCCTTCGGTCATGGCTCTTCGAACACTTTCTCCACCCTTACCCAAATGACTCTGAGAAGTTAATGTTGGCATCACAGACAGGCCTGACTAAGAACCAAGTCTCAAATTGGTTCATAAATGCTCGGGTTAGACTATGGAAGCCTATGATAGAAGAAATGTACAAAGAGGAGTTTGCAGAGTCTTCAGTAGAGTCGGATCCATTAGTAGCGAGCAGTTCCACAAGGGAAGGAGGTGCGAGTGATAATGGAGAGGGATGGAAAGGGTAG 1413 0.4565 MVSQESSPNPTSSILHQFIISDSFTSPNQFENHHFDAYGSHLRGSNTFPQSLGVLPSIQSLGERMSRSIDLVQAPAVGEESEISHTRHFMDLLGAANESNHQAHRLSLSLGSHVLMPSVHYRQRPLNSDFVSSNYLFSGEEAREACNPGVERLCDDYSYVSSAFATPSTSLNRSCSTSYGTESFVNAVGNSRYLRPTQSLLEEVVNAGGKAIDLSNEKYIGRLSRSGRRGALGFASELKAELCGNGSLSAEKQDIQIEIAKLIGLLEEVESRYEEYYHQMEDVVSSFEVIAGVGAAKSYTALALQAMFRHFCSLRDAIISQINVARRKLSHDLPKISTGFSQLSLFDQEGRNNRMTLQQLGMFQSHRQAWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFAESSVESDPLVASSSTREGGASDNGEGWKG* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1121 470 Coils Coil 252 272 - -
Vvi18g1121 470 CDD homeodomain 370 431 IPR001356 GO:0003677
Vvi18g1121 470 SUPERFAMILY Homeodomain-like 375 437 IPR009057 -
Vvi18g1121 470 Gene3D - 364 445 - -
Vvi18g1121 470 Pfam Homeobox KN domain 387 426 IPR008422 GO:0003677|GO:0006355
Vvi18g1121 470 MobiDBLite consensus disorder prediction 447 461 - -
Vvi18g1121 470 MobiDBLite consensus disorder prediction 441 470 - -
Vvi18g1121 470 Pfam Associated with HOX 188 318 IPR006563 -
Vvi18g1121 470 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 101 452 - -
Vvi18g1121 470 SMART HOX_1 370 434 IPR001356 GO:0003677
Vvi18g1121 470 SMART prehox3 182 320 IPR006563 -
Vvi18g1121 470 ProSiteProfiles 'Homeobox' domain profile. 367 430 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1121 Vvi-Chr18 11196642 11198302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1121 93 455 Homeobox Transcription Factor Family AT1G19700 43.536 4.69e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi18g1121 POX 8.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1121 - - vvi:100252354 926.391