Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1112 ATGATGGCTTCTTCAAGTGGAAACTCTTCAGGATCAACTCAGCTTCAGAACTCTGGTTCTGAAGAGGATCTGCAGCATGTGATGGATCAAAGAAAAAGGAAGAGAATGCTATCAAATCGGGAATCCGCAAGGCGTTCCCGGATGAGAAAACAGAAGCACCTGGATGATCTGATGGCCCAAGTTGCTCAGCTCAGGAAGGAAAATAACGAAATCCTTTCAAGCATCAACATCACCAACCAGCGCTACTTGACCGTTGAGGCTGATAATTCAATTTTGAGGGCTCAGGCTATGGAACTGAGCCACAGATATCAGTCTCTCAATGACATCCTCAATTACATGAACACAAGCAATGGCGTCTTTGAAACTGAGGATCTTCCCGTCACTGTTGATCCCTTCATGAACCCAATGAACTACCTTTACCTTAACCAACCCATCATTGCTTCTGTAGACATGTTTCCATACTGA 465 0.4452 MMASSSGNSSGSTQLQNSGSEEDLQHVMDQRKRKRMLSNRESARRSRMRKQKHLDDLMAQVAQLRKENNEILSSINITNQRYLTVEADNSILRAQAMELSHRYQSLNDILNYMNTSNGVFETEDLPVTVDPFMNPMNYLYLNQPIIASVDMFPY* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1112 154 CDD bZIP_plant_GBF1 32 82 IPR045314 GO:0003700|GO:0006355
Vvi18g1112 154 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 34 49 IPR004827 GO:0003700|GO:0006355
Vvi18g1112 154 PANTHER BZIP TRANSCRIPTION FACTOR 44 5 149 - -
Vvi18g1112 154 SMART brlzneu 27 91 IPR004827 GO:0003700|GO:0006355
Vvi18g1112 154 MobiDBLite consensus disorder prediction 1 52 - -
Vvi18g1112 154 MobiDBLite consensus disorder prediction 24 52 - -
Vvi18g1112 154 Pfam bZIP transcription factor 31 76 IPR004827 GO:0003700|GO:0006355
Vvi18g1112 154 Coils Coil 47 74 - -
Vvi18g1112 154 Gene3D - 29 83 - -
Vvi18g1112 154 SUPERFAMILY Leucine zipper domain 31 83 IPR046347 GO:0003700|GO:0006355
Vvi18g1112 154 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 29 76 IPR004827 GO:0003700|GO:0006355
Vvi18g1112 154 MobiDBLite consensus disorder prediction 1 23 - -
Vvi18g1112 154 FunFam BZIP transcription factor 29 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1112 Vvi-Chr18 11138196 11138660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1112 25 154 bZIP Transcription Factor Family AT4G34590 56.115 2.26e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g1112 bZIP_1 8.2e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1112 K25786 - vvi:100855209 292.352