Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1109 ATGGCAACTCCAGTTGAGCCTCCAAATGGGACTAGATGCGAAGGAAAACATTATTATTCAATGTGGCAGACTTTGTTTGAGATTGATACAAAATATGTGCCCATCAAGCCAATAGGTCGGGGAGCATACGGTATCGTGTGCTCTTCTGTGAACAAGGAAACCAATGAGAAAGTTGCAATTAAGAAGATACATAATGCGTTTGATAACCGTGTTGATGCACTGAGAACTTTGCGTGAGATTAAACTTCTTCGGCATCTTCGACATGAAAATGTGATTGCTTTAAAAGATGTCATGATGCCTATACACAGGAGAAGTTTCAAGGATGTCTATCTGGTTTATGAACTCATGGATACGGATTTGCACCAGATTATTAAGTCCTCCCAAGCGCTTACTAATGACCACTGCCAATATTTTCTGTTCCAGTTGCTCCGAGGCCTGAAGTATCTCCACTCAGCAAACATCCTCCACCGAGACTTGAAGCCTGGAAACCTTCTTATCAATGCAAACTGTGACCTAAAAATATGTGATTTTGGGCTAGCTCGAACTAGCACTGGCAAGGGCCAGTTCATGACTGAGTATGTGGTCACTCGCTGGTACAGGGCCCCAGAACTCCTCCTCTGCTGTGACAACTATGGAACCTCCATTGATGTGTGGTCTGTTGGATGCATCTTTGCGGAGCTTCTCGGCCGGAAACCTATATTCCCTGGCACAGAGTGTCTTAACCAGCTCAAACTGATCATCAACATCCTTGGGAGCCAGAGGGAGGCTGATATTGAATTCATTGACAACCCCAAAGCAAGGAAATACATCAAGTCTCTCCCGTTCTCACCAGGGACGCCTTTTTCCCGTCTTTACCCAAATGCCCATCCCATGGCAATTGATCTGCTGCAGAAGATGCTAATTTTTGACCCCTCAAAGAGGATTGGTGTCACCGAAGCACTCCAACACCCTTTCATGTCCTCACTGTATGATCCCAGTAAGAACCCTCCAGCACAGGTCCCCATTGATCTGGACATAGACGAGGATTTAGGGGAAGAGATGATAAGGGAGATGATGTGGAAGGAAATGCTCCATTATCATCCTGAAGCTGTTACAAGCAATGGGGAGGCAAGTTAG 1116 0.4552 MATPVEPPNGTRCEGKHYYSMWQTLFEIDTKYVPIKPIGRGAYGIVCSSVNKETNEKVAIKKIHNAFDNRVDALRTLREIKLLRHLRHENVIALKDVMMPIHRRSFKDVYLVYELMDTDLHQIIKSSQALTNDHCQYFLFQLLRGLKYLHSANILHRDLKPGNLLINANCDLKICDFGLARTSTGKGQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAELLGRKPIFPGTECLNQLKLIINILGSQREADIEFIDNPKARKYIKSLPFSPGTPFSRLYPNAHPMAIDLLQKMLIFDPSKRIGVTEALQHPFMSSLYDPSKNPPAQVPIDLDIDEDLGEEMIREMMWKEMLHYHPEAVTSNGEAS* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1109 371 SUPERFAMILY Protein kinase-like (PK-like) 24 326 IPR011009 -
Vvi18g1109 371 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vvi18g1109 371 FunFam Mitogen-activated protein kinase 116 345 - -
Vvi18g1109 371 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1109 371 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Vvi18g1109 371 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Vvi18g1109 371 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1109 371 Gene3D Phosphorylase Kinase; domain 1 19 355 - -
Vvi18g1109 371 CDD STKc_TEY_MAPK 26 361 - -
Vvi18g1109 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vvi18g1109 371 FunFam Mitogen-activated protein kinase 18 126 - -
Vvi18g1109 371 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1109 371 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 31 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1109 Vvi-Chr18 11126791 11128991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1109 1 369 MAP Kinase Gene Family AT1G10210 85.908 0.0 685
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vvi18g1109 Pkinase 8.3e-72 CL0016