Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1107 ATGCCCAGATCTTCAGACCTTCCTGACTGTTTCTATCAAAACCAGCCTATCTTAATCTCTCCAAGCCGCCCAACTCCCAAGCATTCTCTTTATCTCTCCAACCTCGATGATCAGAAGTTCCTCAGATTCTCCATTAAATATCTCTACCTTTTCAGAAAATCCACCAGCTTAGATGTGTTGAAGTATTCTCTTTCCAGGGTTCTAGTGGATTACTATCCATTGGCTGGGAGGTTGAGGACAAGCTCAGAAGACGAGCAGAAGCTTGAGATTGATTGCAATGGAGAAGGTGCTGTGTTTGCTGAAGCTTTCATGGATTGCAGTGCCGATGACTTCCTTGAAGTTTCCAGCAGGCCAAACAGGTCTTGGAGAAAGCTCTTGTATAGGATAGAAACTCACAGCTTCTTGGATATTCCTCCTCTCATAGTTCAGGTGACCAGTCTCCGCTGCGGAGGGATGATCCTCTGCACCGCCATCAATCACTGCCTCTGCGACGGCATCGGCACCTCCCAGTTTCTTCACGCGTGGGCCCACATCACCGCCAAGCCCAACGGGGACCTACCAATCGCGCCGTTCCACAGCCGCCACGTGTTGAAACCGAGAAATCCGCCCCAGATACCCTTTGATCATCCAGGATTTACGAGGATTGCCCCCAGCAAGGACCTGAACCTGAATCAGTGCCTGCAGTCACAGCCGCTCGTCCCCACCTCCTTAACCTTCACCCCGTCTCATATCCTGGAGCTGAAGAGGCATTGCACCCCATCGCTAAAATGCACCACCTTTGAAGCCCTGGCATCTCACACGTGGCGGTCGTGGGTTAAAGCTCTGGACCTGTCCCCTTCACTCCATGTCAAGCTCCTTTTCTCTGTGAACGTCAGAAAAAGATTAAAGCCAGAAATTCCACAGGGGTATTACGGAAATGGGTTCGTGCTAGGATGTGCGGAGTCGACGGTGAAGGAGGTGGTGAGTGGTAACTTGCACAGTGGGGTGAAGCTGGTGCAGCAGGCTAAATCAGCTCTAACCGATGATAACGTGAAGTCCATGATCGATTTGCTGGAGGACAAAACGGTGAAAACAGACCTATCGGCGACTTTGGTGATATCGCAATGGTCGAAGCTAGGGCTAGAGGATTTGGACTTTGGAGAAGGAAAGCCACTGCAAATGGGTCCTCTTCTCAGTGATATTTACTGCTTATTTTTGCCCGTCATTGGTGATTTTGATGCCACCAGAGTGCTGCTCTCGGTGCCTGAATGCGCGGTCGACAAATTCGAGTATTACATGAAGGATTTGTCGGATAGAGATGATTATGACGTTGGAAATGGTTATGAAGGGGAAGATAATGGGTTGATGATTTGA 1353 0.4959 MPRSSDLPDCFYQNQPILISPSRPTPKHSLYLSNLDDQKFLRFSIKYLYLFRKSTSLDVLKYSLSRVLVDYYPLAGRLRTSSEDEQKLEIDCNGEGAVFAEAFMDCSADDFLEVSSRPNRSWRKLLYRIETHSFLDIPPLIVQVTSLRCGGMILCTAINHCLCDGIGTSQFLHAWAHITAKPNGDLPIAPFHSRHVLKPRNPPQIPFDHPGFTRIAPSKDLNLNQCLQSQPLVPTSLTFTPSHILELKRHCTPSLKCTTFEALASHTWRSWVKALDLSPSLHVKLLFSVNVRKRLKPEIPQGYYGNGFVLGCAESTVKEVVSGNLHSGVKLVQQAKSALTDDNVKSMIDLLEDKTVKTDLSATLVISQWSKLGLEDLDFGEGKPLQMGPLLSDIYCLFLPVIGDFDATRVLLSVPECAVDKFEYYMKDLSDRDDYDVGNGYEGEDNGLMI* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1107 450 Gene3D - 222 427 IPR023213 -
Vvi18g1107 450 Pfam Transferase family 18 426 - -
Vvi18g1107 450 Gene3D - 14 214 IPR023213 -
Vvi18g1107 450 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 19 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1107 Vvi-Chr18 11099847 11102086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1107 18 389 Monolignol Biosynthesis Gene Families AT5G48930 31.234 8.57e-50 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1107 - - vvi:100243831 922.539