Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1105 ATGGAGTCTGCAAATCGGCATCACCAACATCAGCTCCAAGACCAGCTGGTTGTGTCTTCTCCTTTATTGGCTGCTAACCCATCTTGTTATGCACCTGCACCTTCCAACCATGGTTGGACCCCTAACATCATTTTGAATACCGGTAGCTTCAACCCAAATTTTAATGGGATTCTCTTCAACCCAAGGGATTCAAGGCAGAAAAATGACAGTATACTCCATCCACTGAACAGTTCCGTGGTTCAAGACTTAGGCTTTCACTGGGCTAGTAATGCAGGGAGTTTCACCAGTCAGTCAGCCCACGACCTGCATCCAACGATTAAGGAAGAGCTGTCAGAATCTTTCCCCAAATTCACTGAAATGATAAACAGTTCCTCAAGTGCTGTTGAAGATCTCCATTTACCTCCCACAAGCTACATAAGAAGTAAAGACTTGAATGATCTGAGTGAGAAGCTTTTGCTCAAGTCCTTTTCTTCTGGTTGTCAAATAAATGGGCTTCAACTTTCAGCTGGAGAATTTTGCGCCAATGCTCAAAGCTGTAACACTGGTTTTGGAGGTGTAGCCATACCTAGCAGAGGGCATTTCAGCCAGATTTTTCCTACCATAAATATTTCAAACTTGAGTCAACCTTCTTCCACAATTTCTAGCTCCTTGGACATGAACTTGCAGGCTTTGGATCTATTAACTTCTGCAAGATTTAGTGGGACTTTTAGCCAGCCCTCGCACAATAATCTTGGCCTATTCAAAGATAGTCTTTCTTTTGGTCTTGATCACTTGCAGCAATCAACTAACAGGCCATCAAATAGCTCTAGTAAAATATCACCCTTCACCAATGGAGTTGCAGAAGTAAAGAGACCCAGCAGTTTTTTGGAGCCAAAAGCAACTCAAGCAACACCCAAGAAATCGCGGTTGGAGTCACGCGCTTCATGCCCGCCCATTAAGGTTAGAAAAGAGAAATTAGGAGATAGAATTGCAGCTCTCCAGCAGCTGGTGGCACCATTTGGCAAGACTGACACGGCATCTGTACTAATGGAGGCTATTGGATATATCAAATTCCTTCAAAACCAGGTCGAGACACTAAGCGTTCCTTACATGAAGTCATCACGCAACAAGAGCAGTATAAGTATGCAAGGGGGTTCAGCGGACGGGGAGGGAAGCGAGGAGCCAAGGCGAGATCTCCGAAGCCGAGGGCTGTGTCTAGTGCCCTTGTCATGCATGTCCTACGTAACCACTGATTGCGGGGGTGGTGGCGTTTGGCCACCCCCAAGCTTCGGCGGAGGAACGTAA 1284 0.4595 MESANRHHQHQLQDQLVVSSPLLAANPSCYAPAPSNHGWTPNIILNTGSFNPNFNGILFNPRDSRQKNDSILHPLNSSVVQDLGFHWASNAGSFTSQSAHDLHPTIKEELSESFPKFTEMINSSSSAVEDLHLPPTSYIRSKDLNDLSEKLLLKSFSSGCQINGLQLSAGEFCANAQSCNTGFGGVAIPSRGHFSQIFPTINISNLSQPSSTISSSLDMNLQALDLLTSARFSGTFSQPSHNNLGLFKDSLSFGLDHLQQSTNRPSNSSSKISPFTNGVAEVKRPSSFLEPKATQATPKKSRLESRASCPPIKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQNQVETLSVPYMKSSRNKSSISMQGGSADGEGSEEPRRDLRSRGLCLVPLSCMSYVTTDCGGGGVWPPPSFGGGT* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1105 427 MobiDBLite consensus disorder prediction 283 306 - -
Vvi18g1105 427 CDD bHLH_AtbHLH_like 310 360 IPR045239 -
Vvi18g1105 427 Gene3D - 313 373 IPR036638 GO:0046983
Vvi18g1105 427 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 137 407 - -
Vvi18g1105 427 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 365 IPR036638 GO:0046983
Vvi18g1105 427 FunFam Transcription factor bHLH123 family 313 375 - -
Vvi18g1105 427 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 303 352 IPR011598 GO:0046983
Vvi18g1105 427 MobiDBLite consensus disorder prediction 367 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1105 Vvi-Chr18 11057064 11060964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1105 25 427 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 43.875 1.61e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1105 - - vvi:100260944 837.795