Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1075 ATGGAGACGCCTTTTATTTTAAGGAGAATAGGCTCGTCCGTCGTCCTGTCAAAGTCGTTAATAGGCCGTCAAGTCAGACGGAAATCGTCGTATTCCAAGTGGACCCGCATTGGGAAACTACCTGGAAGGCAGTGCACAGTCACACAATGCAACATGGACCCCACGTCATTTATGGATCTCCAGCTTCAAGCTTTGATTGTGTACTCTACTTTTTCATTGATACTAATTAATAAACTTGCAGAGGTTTTGGCAACAATGAACGTTCAAGTTTATTTCACGGTCATCTTTTTGGTGGCTTTGTCTTCCTCCCGGTTGAGTATGGTTGGAGCGTCCCCCGGATCGTTGTCAACGGCGATTCTGATGAGGGTTGATCAGTCGGGTAAGGGAGATTATCAAAAAATACAAGATGCAATTGATGCCGTACCGTCTAACAACACAGAGGTTGTGTTCATATGGGTTAAGCCTGGAATCTACAGAGAAAAGATTGTAGTACCGGCCGACAAGCCCTTCATAACGTTAAGTGGCACAAAAGCAACTACCACAATAATAACATGGAACGATACTGGCGAGATATTTGACTCCCCAACATTTTCTGTACTGGCTACTGATTTTGTGGGACGATTTCTCACTATTCAGAACACATATGGGGCTGGTGCAAAGGCAGTTGCATTGAGGGTGTCAGCAGATAGGGTGGCATTCTTTGAGTGCAGGATTCTTTCTCATCAAGATACCCTTCTGGATGACACTGGCAGGCACTTCTACCGCAACTGTTTTATCCAGGGAGACACAGACTTCATTTGTGGAAATGCTGCTTCTCTTTTTGAGAAATGTCATTTGCATTCACTTTCGGAAGAAAGCGGGGCTATCACAGCCCAGCGCCGGGAGTCGCCAGCAGAGGACACAGGCTTCATCTTCTTGGGCTGCAAACTTACCGGCCTCAAAAGTGCCTTACTAGGACGGCCATGGGGTGATTATTCAAGAGTTGTTTTTGCCTTCACTTACATGTCTAATGCGATACTGCCTCAGGGATGGGATGATTGGAGCGACACTTCCAAGCAAAGTACGGCGTTCTACGGGCAATACAAGTGCTACGGGCCAGGAGCCATAACTTCTAAAAGGGTTGAATGGTCACGCAATCTCACAAGCCAGGAAGCTGCGCCCTTCTTGACTAAGAACTTGATTGGTGGCAACAGTTGGATCAGGCCTGCCCCAACCCACTTCAAGAGAGCTTCTACCTCCATCTCTAACAATGCTAATGGAAATACCTAA 1269 0.4657 METPFILRRIGSSVVLSKSLIGRQVRRKSSYSKWTRIGKLPGRQCTVTQCNMDPTSFMDLQLQALIVYSTFSLILINKLAEVLATMNVQVYFTVIFLVALSSSRLSMVGASPGSLSTAILMRVDQSGKGDYQKIQDAIDAVPSNNTEVVFIWVKPGIYREKIVVPADKPFITLSGTKATTTIITWNDTGEIFDSPTFSVLATDFVGRFLTIQNTYGAGAKAVALRVSADRVAFFECRILSHQDTLLDDTGRHFYRNCFIQGDTDFICGNAASLFEKCHLHSLSEESGAITAQRRESPAEDTGFIFLGCKLTGLKSALLGRPWGDYSRVVFAFTYMSNAILPQGWDDWSDTSKQSTAFYGQYKCYGPGAITSKRVEWSRNLTSQEAAPFLTKNLIGGNSWIRPAPTHFKRASTSISNNANGNT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1075 422 FunFam Pectinesterase 115 404 - -
Vvi18g1075 422 SUPERFAMILY Pectin lyase-like 118 407 IPR011050 -
Vvi18g1075 422 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 115 401 - -
Vvi18g1075 422 Pfam Pectinesterase 123 397 IPR000070 GO:0030599|GO:0042545
Vvi18g1075 422 Gene3D - 118 410 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1075 Vvi-Chr18 10831633 10837616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1075 120 402 Carbohydrate Esterase AT5G47500 40.333 1.68e-83 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1075 K01051 - vvi:100255758 684.871