Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1074 ATGCATTTTAAAAGCATTGTTCGCGAGCTTAGGGACATGAGAGATAGTATAGGAAACTCGTCGAGAAGGAGAGCAGAGGGGAAGCACACGAACCGTCGTGGAAGATCGCATATAGCCCCTGAAGGGTCTCCATCTTCATCTGCACTCTTTCAACAACAAAGTCAGTGGGCTAACATGCCTCCCGAATTGCTTCTTGATATAATCCAGAGGGTGGAAGCCGCCGAGGCTTCATGGCCTGCCCGTCGGGATGTTGTTTCTTGTGGATCAGTTTGTAGGTCATGGCGGGATATCACCAAAGAGATAGTCAAGACTCCCGAGCAATGTGGTTGCCTCACGTTCCCTATTTCATTGAAGCAGCCTGGGCCAAGGGAATCCCAAATTCAATGCTTTATCAAGAGAGAAAGGGCGACTTCAACTTTCCGATTGTATCTTGGTCTGAGCCCTGCCCTATCGGGGGATGCCAGTAAATTATTATTGGCTGCCAGAAAGATCAGAAGGGCGACGAGCACGGAGTTTGTGATATCCTTGCTTGGGGACGATTTCTCTCGAGCAACCAATGCATATGTTGGAAAATTAAAGTCTAATTTTCTGGGTACTAAATTCACCATCTACGACAGTCAGCCGCCACATGACCCTGCAGTCCAGTCGAATTGTCAGTCAAACGGAAGATTACATTCAAAGCAGGGGTCTACCAGGTCACCCAGTGGTAACTATAATGTGGCCACCATATCTTATGAGCTCAACGTTCTGCGTACCAGAGGCCCTAGGAGAATGCACTGCACCATGCATTGGATCCCCATCTCTGCAATTCAGGAAGGTGGCACCGCCCCAACTCCAATGACATTTGCAAAATGCCAAAAGGATCAATTTCCTCAGTCAGCGGATCCAAAAGGAAAGAACCCACTCATTGAGTTTAGCTCCAACAGTCTTGCTGAGACACCAGAATCCATCCAAGACACGAGAAATCCACTGGTTTTGAAAAATAAAGCTCCTAGATGGCATGAGCAGCTGCAATGCTGGTGCCTGAATTTCAAAGGACGTGTTACAGTGGCCTCCGTAAAAAATTTCCAGCTGGTGGCAGCTGTGGAGCCTTGCCAAAATGTCTCTGTGGCAGAGCAAGAAAAAGTAATACTACAGTTTGGAAAGATTGGGAAAGACATATTCACCATGGATTATCGATACCCCCTCTCTGCCTTCCAAGCATTTGCAATCTGCTTGAGCAGCTTTGACACTAAACCAGCCTGTGAATGA 1251 0.474 MHFKSIVRELRDMRDSIGNSSRRRAEGKHTNRRGRSHIAPEGSPSSSALFQQQSQWANMPPELLLDIIQRVEAAEASWPARRDVVSCGSVCRSWRDITKEIVKTPEQCGCLTFPISLKQPGPRESQIQCFIKRERATSTFRLYLGLSPALSGDASKLLLAARKIRRATSTEFVISLLGDDFSRATNAYVGKLKSNFLGTKFTIYDSQPPHDPAVQSNCQSNGRLHSKQGSTRSPSGNYNVATISYELNVLRTRGPRRMHCTMHWIPISAIQEGGTAPTPMTFAKCQKDQFPQSADPKGKNPLIEFSSNSLAETPESIQDTRNPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVEPCQNVSVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1074 416 PRINTS Tubby superfamily signature 373 392 IPR000007 -
Vvi18g1074 416 PRINTS Tubby superfamily signature 394 416 IPR000007 -
Vvi18g1074 416 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Vvi18g1074 416 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Vvi18g1074 416 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Vvi18g1074 416 PRINTS Tubby superfamily signature 344 360 IPR000007 -
Vvi18g1074 416 PRINTS Tubby superfamily signature 326 343 IPR000007 -
Vvi18g1074 416 Pfam F-box domain 56 103 IPR001810 GO:0005515
Vvi18g1074 416 SUPERFAMILY F-box domain 52 99 IPR036047 GO:0005515
Vvi18g1074 416 FunFam Tubby-like F-box protein 113 416 - -
Vvi18g1074 416 MobiDBLite consensus disorder prediction 208 236 - -
Vvi18g1074 416 CDD F-box_AtTLP-like 56 100 - -
Vvi18g1074 416 ProSitePatterns Tub family signature 2. 401 416 IPR018066 -
Vvi18g1074 416 SUPERFAMILY Tubby C-terminal domain-like 105 416 IPR025659 -
Vvi18g1074 416 PANTHER TUBBY-RELATED 29 414 - -
Vvi18g1074 416 MobiDBLite consensus disorder prediction 209 236 - -
Vvi18g1074 416 Gene3D Tubby Protein; Chain A 114 416 IPR025659 -
Vvi18g1074 416 ProSitePatterns Tub family signature 1. 344 357 IPR018066 -
Vvi18g1074 416 Gene3D - 51 102 - -
Vvi18g1074 416 Pfam Tub family 117 411 IPR000007 -
Vvi18g1074 416 MobiDBLite consensus disorder prediction 14 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1074 Vvi-Chr18 10828073 10829850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1074 28 416 TUB Transcription Factor Family AT1G47270 63.910 5.33e-173 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vvi18g1074 Tub 3e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1074 K19600 - vvi:100253937 846.269