Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1070 ATGCAGGCACTGTGCTCATTACACCATGCGATGGATAAAGCCAAGCTTCTTATCCAGAACTGCACTGAGTCTAGTAAATTATACTTGGCAATTACAGCAGATAAAATAGTTTTGAGATGTGAAAGAATATGCAACTGTTTGGAGTCGAGTTTAAGACAACTTCAAAATAATGTTCCAACATTGTTGGCTGCAAAGATATCTGGTATTGTTGAAGACCTTAAGGGTGCAAAATTTACTGTGGAATCTGCTGATGATGAGGCTGGAAGGGTTGTTCTAGCATTGGTTCGGCAGGGCATGCCTGACTCTGAATCTATAAATATTTCTGAACTTGAAGCTATTCAAATCGCTGCTTCAAGGCTGAATATTGCATCCCATATGGCACTCTTGATTGAGAAAAGGTCTATAAAGAGGCTAATCGACAAAGTTCCTGACACAAACCTAACAAAGATGAAAATCTTGAAGTACCTCCTATATCTTCTGAGGAAGTATGGAGATTCAATAAGGAGCCGCAATACTGAGAGCACTACTATGTATCAGTCCATTGAGCAAGAACCACATGAAGAAAGTGCAATATATGAAACTCTAGCTGATGACTTCAGTGTAACCAAACCTCCTGAGGAATTCAAATGTCCCATCTCTATGAGACTGATGTATGATCCTGTTGTTATAGCTTCTGGGCAAACATATGAAAGATTCTGGATAACTAAGTGGTTCAATGATGGGAATGATACATGTCCAAAGACACATGAAAAGTTGTCTCAGTTTTTCCTCACTCCAAACTCCACAATGAAGAACCTCATTTCGAGGTGGTGCTTGAAGCATGGGATCAGTATTTCTGATCCATGTTCACAACAAGCTCCTGAATCCCTTCCTTTGCAGAAACTTTCACCATCCACTTCCATTGCTAGCTTTGCCAGTTCTCTGAATGGTCTGTGCCTGCAAACCAGCAGTGTGTCATTACACTCTACAGACACCAATTTTCCTTCAAATAAATTGGACATAAGGATGGATATCCTGCAAACCAGCAGTGTGTCATTACACTCTACAGACACCAATTTTCCTTCAAATAAATTGGACATAAGGATGGATAATGGCTCTGCACACGAGCTTCCTCAGATGAATGCTGATTCTCAGGGATGCCAATCTTCTGCAAATAGGCATGGCATGAATTTTGCCTTTCTCTCCAAACTTGCTGCACTTCCATGGGAATCCCAGTGCAAGGAGATTGGAAACGTAAGAGATCAACTGAAAGACAGTATTCAAGCATGTCATTCTACATTTTCCTCTAGTTACATCAAACCGCTGATTAGATTTTTGAAGGATGCATGTGAAAATGGCAATTTACAAGCACAGCGAGATGGAGCTCTAGTTCTTTTGTATTTTCTAAATAAGCGCAGAAGTGAAATGCCACCCTTACATGAAGATGCAATTTATGTTTTAGCATCATTTCTGGACTCAGAAATCACTGAAGAAGCGCTTGCAATCATGGAAGTGTTGTCTTGCCAACGTCATTATAAGTCAGAAATTGTGGCATCTGGTGTTCTTCCTTCCATCATAAAATTCCTTGACACCAAAATGAAGAAATTCCATGTGCTTGCTCTGAAAATACTCTGCAATTTGTCCTCAAACCATGATATGGGATACCACATTGTCTATTTGGATTGCATCCCAAAGCTGGCTCCATTCTTTGTTGATCACAAACTTGCAGGATATTGCATTAAAATTTTCAGAAACTTGTGTGATATTGAGGAGGCTAGGATTACAGTGGCTGAGACCAATCAATGCATCGATTTCATTGCTAAAATACTAGAAAATGGCAGTGAGGAGGAGCAAGAAGATGCCTTGGAAGTTCTTCTTTCTCTATGTCATTACAGGGAGTATGGTCAGCTTTTCAGGGAAGATCACATTGTTCAATCATTGTTCCATATCTCTCTCAATGGGAATGCCAGAGGACAGGAGATTGCTAAGGAATTACTCCAGCTTTTGAGAAATATTAAAAATGACCCCGTTCTAGAATGTTCAAGTTCTAGTTCTACCTCCGATGAAGTCATACAAGATTTTGTTATCAACTCCAAAGGAAAGAAACTGCCGTTGAAGGCATCTAGAATTCTGGGAAAGAAAATATTAAGATTCAGAAAACCAAGAAGCTAG 2151 0.3975 MQALCSLHHAMDKAKLLIQNCTESSKLYLAITADKIVLRCERICNCLESSLRQLQNNVPTLLAAKISGIVEDLKGAKFTVESADDEAGRVVLALVRQGMPDSESINISELEAIQIAASRLNIASHMALLIEKRSIKRLIDKVPDTNLTKMKILKYLLYLLRKYGDSIRSRNTESTTMYQSIEQEPHEESAIYETLADDFSVTKPPEEFKCPISMRLMYDPVVIASGQTYERFWITKWFNDGNDTCPKTHEKLSQFFLTPNSTMKNLISRWCLKHGISISDPCSQQAPESLPLQKLSPSTSIASFASSLNGLCLQTSSVSLHSTDTNFPSNKLDIRMDILQTSSVSLHSTDTNFPSNKLDIRMDNGSAHELPQMNADSQGCQSSANRHGMNFAFLSKLAALPWESQCKEIGNVRDQLKDSIQACHSTFSSSYIKPLIRFLKDACENGNLQAQRDGALVLLYFLNKRRSEMPPLHEDAIYVLASFLDSEITEEALAIMEVLSCQRHYKSEIVASGVLPSIIKFLDTKMKKFHVLALKILCNLSSNHDMGYHIVYLDCIPKLAPFFVDHKLAGYCIKIFRNLCDIEEARITVAETNQCIDFIAKILENGSEEEQEDALEVLLSLCHYREYGQLFREDHIVQSLFHISLNGNARGQEIAKELLQLLRNIKNDPVLECSSSSSTSDEVIQDFVINSKGKKLPLKASRILGKKILRFRKPRS* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1070 716 PANTHER U BOX DOMAIN-CONTAINING 2 663 - -
Vvi18g1070 716 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Vvi18g1070 716 CDD RING-Ubox_PUB 205 257 IPR045210 -
Vvi18g1070 716 Gene3D - 409 685 IPR011989 -
Vvi18g1070 716 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Vvi18g1070 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 277 IPR013083 -
Vvi18g1070 716 FunFam RING-type E3 ubiquitin transferase 409 685 - -
Vvi18g1070 716 Pfam U-box domain 205 274 IPR003613 GO:0004842|GO:0016567
Vvi18g1070 716 Pfam Armadillo-like 479 560 IPR006911 -
Vvi18g1070 716 SUPERFAMILY RING/U-box 199 280 - -
Vvi18g1070 716 SUPERFAMILY ARM repeat 433 669 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1070 Vvi-Chr18 10804023 10808963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1070 1 668 U-box Gene Family AT4G36550 34.218 1.75e-96 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1070 - - vvi:100262606 1395.18