Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1069 ATGGCATCCCATGCTTTCTCCTCTTCATGTTATTCAAGCTCCTCTTGGACACAGAAGCAAAACAAACTATTTGAAGAAGCCCTGGCTCTGTACGACAAGAACACTCCTGACCGCTGGGCAAATATAGCCAAGGCTGTGGGTGGGAAATCTGCTGAGGAAGTAAAGAGACACTATGAGATCCTGGAACAGGATGTCATGCATATAGAAAACGGCCAAGTCCCTCTACCCATTTACAGGTCAACTGGGAGTAGCAGCGGAGGAAGTGTTGATGAACAAAGGCACTTGCTGAAGAATCTAAAGCTCCGTTGA 309 0.4693 MASHAFSSSCYSSSSWTQKQNKLFEEALALYDKNTPDRWANIAKAVGGKSAEEVKRHYEILEQDVMHIENGQVPLPIYRSTGSSSGGSVDEQRHLLKNLKLR* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1069 102 MobiDBLite consensus disorder prediction 81 102 - -
Vvi18g1069 102 SMART sant 12 64 IPR001005 -
Vvi18g1069 102 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 7 86 IPR044636 GO:0003700
Vvi18g1069 102 FunFam Transcription factor SRM1 8 75 - -
Vvi18g1069 102 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Vvi18g1069 102 Gene3D - 7 75 - -
Vvi18g1069 102 ProSiteProfiles SANT domain profile. 11 58 IPR017884 -
Vvi18g1069 102 CDD SANT 16 58 IPR001005 -
Vvi18g1069 102 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Vvi18g1069 102 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1069 Vvi-Chr18 10790221 10791840 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi18g1069 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1069 - - vvi:100248845 192.971