Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1066 ATGGAACTGAGCAAGGAAATGGGATTTCCACCCTCCTCAGGCTATAACCCTCTGGCATCCGCGGGATCTGGAGGAGGAGGAGATGATCATCATAATATTGATAATGGCACTACCGTCTTCAAACCACCTCAAATCCCACACCATCATCCTCTTCTTCAACAACAACAAGAGCTGAATCCGCAACAGCAGTCACTCGGCCAGGGATGTGATCCAGATCCAGACCCAGACCCAGACCCAGTTCACGTCGCCGGCGTCCTTGCTGGTGCAACAATTGCGTCCACTATCGGCGGATCGAACTCCAAGGCCTCCGTTAGGTATAGAGAATGCCTCAAGAACCACGCAGCCAACATCGGCGGCAACGTCGTCGACGGCTGCGGGGAGTTCATGCCCGATGGAGAAGAAGGAACCCTAGAAGCTCTGATGTGTGCAGCTTGTAACTGCCACCGGAACTTCCACCGGAAAGAGGTCGACGGCGAGACCATCGGCAGGAGTGCACCTCACTTTCACCCACTCCCTCCAACTCTAGCATCTCCGCCATATCTGCACCGCCAAAAATTCCCAAAGGCCTTTCACGCACCCCCTTCAACAATCATCATCCCTCCCATGTCCATGGCTTTTGGGACGAGCATCGGCGCCACCGAGTCTTCAAGCGAGGATCTCAGAGCCTTCGACTCCAATGCCGGGGCAGCGCCACCTCCTCCTCCCCCTCCCCCTCCCTCGTCTCTGTCGAAGAAGCGGTTTAGGACGAAATTCACTCAGGAGCAGAAAGAGAAGATGCTGGAGTACGCAGAGAAGGTGGGGTGGAGAATGCAAAAGCAGTACGAAGAACAAGTTCAACAGCTTTGTGCCGAGGTTGGTGTAAAGAGACAGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCCTAAAGAAACAGCCACAGCCGCAGCAGCAACCCCCGCCATTGTAA 951 0.5447 MELSKEMGFPPSSGYNPLASAGSGGGGDDHHNIDNGTTVFKPPQIPHHHPLLQQQQELNPQQQSLGQGCDPDPDPDPDPVHVAGVLAGATIASTIGGSNSKASVRYRECLKNHAANIGGNVVDGCGEFMPDGEEGTLEALMCAACNCHRNFHRKEVDGETIGRSAPHFHPLPPTLASPPYLHRQKFPKAFHAPPSTIIIPPMSMAFGTSIGATESSSEDLRAFDSNAGAAPPPPPPPPPSSLSKKRFRTKFTQEQKEKMLEYAEKVGWRMQKQYEEQVQQLCAEVGVKRQVFKVWMHNNKNTLKKQPQPQQQPPPL* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1066 316 Pfam ZF-HD protein dimerisation region 104 156 IPR006456 -
Vvi18g1066 316 MobiDBLite consensus disorder prediction 1 47 - -
Vvi18g1066 316 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 106 155 IPR006456 -
Vvi18g1066 316 FunFam Zinc-finger homeodomain protein 2 238 305 - -
Vvi18g1066 316 MobiDBLite consensus disorder prediction 209 245 - -
Vvi18g1066 316 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 105 156 IPR006456 -
Vvi18g1066 316 Gene3D - 237 305 - -
Vvi18g1066 316 NCBIfam homeobox domain, ZF-HD class 244 301 IPR006455 -
Vvi18g1066 316 ProSiteProfiles 'Homeobox' domain profile. 242 306 IPR001356 GO:0003677
Vvi18g1066 316 MobiDBLite consensus disorder prediction 228 242 - -
Vvi18g1066 316 SUPERFAMILY Homeodomain-like 232 305 IPR009057 -
Vvi18g1066 316 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 93 303 - -
Vvi18g1066 316 MobiDBLite consensus disorder prediction 59 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1066 Vvi-Chr18 10783147 10784097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1066 100 305 ZF-HD Transcription Factor Family AT1G75240 48.305 1.31e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vvi18g1066 ZF-HD_dimer 2.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1066 - - vvi:100247227 540.421