Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1060 ATGGAAGCTCACAGAAGTCCACCGGAGGTAGTACTGGCAATACTAGTCTTGTTGGTCTTTGTTTCTTGCTTTGCACGTGCCCAGAACAATCCCCTCCGCAACGACACCGAACGGTCAGCGTTGTTCGACCTCCGGTCGTCGTTGGGGCTCAGGGCCAAGGACTGGCCCAGGAGGAGTGAGCCATGCTGGAACTGGACCGGCGTGGCGTGCCAGAACGGTCGAGTCGTTGGAATTAGCGTTTCCGGTTTGCAGCGAACCCATGCCGGGCGTGTCAATCCTCAGTTCGCCGTGGATTCTCTGGCCAATTTGTCCCTCTTAGCTACATTTAACTCATCAGGTTTTGAGCTTCCCGGCTCCATTCCGGACTGGTTGGGGCAAAGCCTGAGCGCACTCCAAGTGCTCGATCTTCGGTCTGCCTCAGTGAAAGGTCCGATTCCTCAGTCACTAGGAAGCTTGGGCAGTCTCCATTCCCTATATCTATCTGGGAATTCTCTCACTGGTGCAATTCCTTCTCAATTGGGGCAGTTATCAGCGCTGTCCGTTCTTAATCTTTCTCAAAATTCCCTTACTGGGTCTATTCCCCAGACTTTCTCCACTCTTAGCAATCTCACCTCTCTTGACCTCTCTTCCAATTATCTTTCTGGATCAGTTCCGTCTGGATTGGCCAACCTTACTAAGCTTCAGTTCTTGAATCTCTCCAGCAATATCTTGACTGCTTCTATTCCCAACCAGCTTGGCCAGCTTTTTCAATTGGTTGAGCTTGATTTAAGTTTGAACAATTTGATGGGAACGGTGCCTGTCGATCTTGGGGGGCTGAGAAGTTTGCAGAAAATGTTACTTGGGAATAATGGTCTACAGGGTTCATTGTCGGATAAGTTGTTTTCGAACCTCACTCGATTGCAGTTCTTGGTTCTGAGCGATAATAAAATTGAGGGGGATATTCCTGGTGTACTGTGGTCAATGCATGAGTTGCGCTTTCTTGATGTGTCTGGTAATAATTTCACGGGTGTTCTTGCAAATCTCAGCTGGAATGTTAATTCCACTAACACTATGTTCAACCTCTCGAACAATCTATTTTATGGAGCCCTGCCTACTCCACTCGGAAAATTCAGCTTAATTGATCTATCTGGTAATTATTTCCAAGGTAAGGTTCCCAATGACATTGAAACCAACACTAGTCTTAACAGAAATTGCCTTCAGTCTGTGCTGGATCAGAGGAGTTTAGAAGATTGTAGACTGTTTTATGCTGAGAGAAACCTAAGTTTTGACAATTTTGGAGCACCTAGTCCGGCTCAGCCGCCACTGCCTGGATCTTCCACAAACAGCAGCAAAAGATGGATATTTATATTGGTGGGTCTATTTGGTGGACTTGGTTTCATTGTGCTTTTGGTATTGGTGCTGGTACTGCTCATAAGAAGATGTGACAAGCGTATTGCGAGTCAAAGAGAAATTGCAAATGTGGGGCCTGCTCCAGAAGGCCGTAGCCCACTACCTGCTAAGGTTTCTATTAACTTTTCGGGTGTGGGAGACTTGTTTACATATGAGCAGATTCTCTGTTACACAGATGGTTTTAGTGAAATAAACCTGATCAAACATGGCCACTCCGGAGATCTCTTCCGTGGCATCTTGGAAAGTGGGGCCCCTGTAGTTGTCAAAAGGGTTGATTTGCGGGCCTTGAAGAAAGAATCATACATGATGGAATTGGATGTGTTGAACAAGGTCTCACATATGAGATTGGTCCCACTCTTGGGGCACTGCTTGGAGCATGATAGCGAGAAGTTACTGGTATATAAATACATGCCAAATGGAGACTTGTCTAATTCCTTATACAGGGTTACGAATTTGGAAGACGACAATCTACAGTCTCTTGATTGGATTACCAGATTGAAAATTGCAATAGGAGCTGCAGAAGGTCTATCTTATCTCCATCATGAGTGTTCCCCACCCCTTGTCCACAGAGATGTTCAAGCAAGTAGTATCCTGCTTGATGATAAATTTGAAGTGCGACTTGGAAGCTTAAGTGAGGTTTGTGCTCAAGAAGGGGACTCTCACCAAAATGTAATCACAAAGTTGTTAAGGAAGCCACAGACCTCTGAACAAGGCTCTTCTGGCTTATTGTCGGCAACCTGCGCTTATGATGTGTACTGTTTCGGGAAGGTCTTGCTTGAGCTTGTGACAGGTAAGCTTGGCATCAGCAAGTCCGATGATGCCACCACAAGGGAGTGGTTGGAGCACACACTGCCATGCATCAGTATATACGATAAGGAACTGGTGACCAAGATTGTTGACCCTTCCCTGATCGTGGATGAGGATCTATTGGAAGAAGTATGGGCCATGGCAATTGTGGCCAGGTCATGCCTTAACCCCAAGCCTTCAAGACGTCCCCTAATGAGAAACATCCTCAAAGCACTGGAGAACCCTTTAAAAGTGGTCAGGGAAGAGAGCAGCAGTTCAGCAAGGCTGAGAACAACTTCATCAAGGAGGTCTTGGAGTACTGCTTTCTTTGGGAGTTGGCGTCACAGCTCGTCTGAGGGTGCTATTGTTCCAGGGCAAATAAACAGAGAGGGGATAAGTGGCTCAAAACAGTCAGGTAGAGTAGGGTCTCAGGGAAGTGGTGGAAACGATCTGTCCTCTTCGCATAAAAGATCGTCGAACGAGATTTTTCCTGAACCAGTTGATATGCAAGATATAGAGAGGCAAGACCAACACTAG 2712 0.465 MEAHRSPPEVVLAILVLLVFVSCFARAQNNPLRNDTERSALFDLRSSLGLRAKDWPRRSEPCWNWTGVACQNGRVVGISVSGLQRTHAGRVNPQFAVDSLANLSLLATFNSSGFELPGSIPDWLGQSLSALQVLDLRSASVKGPIPQSLGSLGSLHSLYLSGNSLTGAIPSQLGQLSALSVLNLSQNSLTGSIPQTFSTLSNLTSLDLSSNYLSGSVPSGLANLTKLQFLNLSSNILTASIPNQLGQLFQLVELDLSLNNLMGTVPVDLGGLRSLQKMLLGNNGLQGSLSDKLFSNLTRLQFLVLSDNKIEGDIPGVLWSMHELRFLDVSGNNFTGVLANLSWNVNSTNTMFNLSNNLFYGALPTPLGKFSLIDLSGNYFQGKVPNDIETNTSLNRNCLQSVLDQRSLEDCRLFYAERNLSFDNFGAPSPAQPPLPGSSTNSSKRWIFILVGLFGGLGFIVLLVLVLVLLIRRCDKRIASQREIANVGPAPEGRSPLPAKVSINFSGVGDLFTYEQILCYTDGFSEINLIKHGHSGDLFRGILESGAPVVVKRVDLRALKKESYMMELDVLNKVSHMRLVPLLGHCLEHDSEKLLVYKYMPNGDLSNSLYRVTNLEDDNLQSLDWITRLKIAIGAAEGLSYLHHECSPPLVHRDVQASSILLDDKFEVRLGSLSEVCAQEGDSHQNVITKLLRKPQTSEQGSSGLLSATCAYDVYCFGKVLLELVTGKLGISKSDDATTREWLEHTLPCISIYDKELVTKIVDPSLIVDEDLLEEVWAMAIVARSCLNPKPSRRPLMRNILKALENPLKVVREESSSSARLRTTSSRRSWSTAFFGSWRHSSSEGAIVPGQINREGISGSKQSGRVGSQGSGGNDLSSSHKRSSNEIFPEPVDMQDIERQDQH* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1060 903 SUPERFAMILY Protein kinase-like (PK-like) 501 804 IPR011009 -
Vvi18g1060 903 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Vvi18g1060 903 SMART LRR_typ_2 152 175 IPR003591 -
Vvi18g1060 903 SMART LRR_typ_2 224 248 IPR003591 -
Vvi18g1060 903 SMART LRR_typ_2 321 344 IPR003591 -
Vvi18g1060 903 SMART LRR_typ_2 200 223 IPR003591 -
Vvi18g1060 903 SMART LRR_typ_2 176 199 IPR003591 -
Vvi18g1060 903 SMART LRR_typ_2 272 296 IPR003591 -
Vvi18g1060 903 SMART LRR_typ_2 297 320 IPR003591 -
Vvi18g1060 903 MobiDBLite consensus disorder prediction 855 885 - -
Vvi18g1060 903 FunFam Predicted protein 494 599 - -
Vvi18g1060 903 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 296 427 - -
Vvi18g1060 903 Gene3D Ribonuclease Inhibitor 34 193 IPR032675 -
Vvi18g1060 903 Gene3D Ribonuclease Inhibitor 194 290 IPR032675 -
Vvi18g1060 903 SUPERFAMILY L domain-like 54 423 - -
Vvi18g1060 903 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vvi18g1060 903 FunFam Leucine-rich repeat receptor protein kinase EMS1 194 292 - -
Vvi18g1060 903 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 34 193 - -
Vvi18g1060 903 Gene3D Ribonuclease Inhibitor 291 427 IPR032675 -
Vvi18g1060 903 Pfam Leucine rich repeat 273 334 IPR001611 GO:0005515
Vvi18g1060 903 Pfam Leucine rich repeat 178 235 IPR001611 GO:0005515
Vvi18g1060 903 Gene3D Phosphorylase Kinase; domain 1 499 599 - -
Vvi18g1060 903 Pfam Protein tyrosine and serine/threonine kinase 529 801 IPR001245 GO:0004672|GO:0006468
Vvi18g1060 903 ProSiteProfiles Protein kinase domain profile. 524 809 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1060 903 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 200 805 - -
Vvi18g1060 903 Gene3D Transferase(Phosphotransferase) domain 1 600 827 - -
Vvi18g1060 903 MobiDBLite consensus disorder prediction 846 903 - -
Vvi18g1060 903 FunFam Putative LRR receptor-like serine/threonine-protein kinase 600 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1060 Vvi-Chr18 10701906 10708870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1060 36 696 Miscellaneous Gene Families AT2G16250 52.695 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Vvi18g1060 PK_Tyr_Ser-Thr 1e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1060 - - vvi:100259194 1659.04