Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1039 ATGCGTGTGGATCATATCTCTAATCTTTGCAATATTGAAGCCGGCCTCCTGCTTATATATTGCAGCCTTGGAGTGACCTTTTTTTTCTCAGGAGGATTAAGGATTTTAGAGATGGGTAAGGGTTTCAAGCTCCGATTCTCTCTGATTCATTCCCTCCAATTCTGCCGTTCCAGAAACCGTTCTGCTCTACCGGAAAGTCCTGTGCCGGCGTCTCATAGGCTCTCGACGGTCAACCGTAAGGGGTTGGACATTGCTTTTCCAAGCGTCCCCGATCCTCCACCCTCCACACCGTGGCACCCTTTTCGCAGACGTCGTGTGAAGACTGTACCAATGGGATGCGGTTGCCGGCGAGGATCGGGTGTAAGGTCTGAAACCTCCTACGACTGCGACACCGAATCGGTGGAATACTCGTGGAAGAAGGATGGAAAGTGGCACGTAATCTCCAGAGTCTACGAGGACGGCCCTCGCCGGAAAATTTGCTACTCCCCTTTTCCTGGCGAATCCGATGGCGACTTGTCGCCGAATCAACCGCAGAAGATGGCCAAGGAGAAGAAAGTGAGAAAGAAAAAGAAGAAAGGGACGGTCCCGAGTGTCCGCACAAGCACGTCTTCGGGAGATAGTGGCTGGTTCAGCAGCGAAGGTGGTGACTATGACGAGGAGACCGAAACCCTACTCTCCTCTTCCAGAAGCTTCTCGAACGACTCTTCTTTCGAATTCAATCATCCACTAGAGACCATAAGCGAAGAATCAAAGAGCGTCGTAGGCAAGCGCGATAGGATGAACAATTCAAAGAAGGCTCGACGACTGAAACGCCACATTTCGAAGAACTGCAGAACAGGATCATCATCCTCATCATCATCAGGCAGCGGAAATCCAAAAACGACATCGTCGCCAGAAGCTGAGTCGCCAGCGAGAGTGTCGGTGTACCAAGGCAGGATACCGTGTAGATTAGATGGGAAGGTGAGAGAGAGCTTCGCGGTGGTGAAGAAATCCAAGGATCCGTACGAAGACTTCAAGAAGTCGATGGTGGAGATGATAATGGAGAAACAGATGTTCGAAACAAAGGATTTGGAGCAGCTGCTGCAATGTTTTCTATCCCTGAATTCGCCGCAGCATCACGGAATCATCGTGGAGGCCTTCTCCGTGGTTTGGGAGGGTTTGTTCTGTAAATCACCACCAATGGCTCGACGTGTTTCGAGGTGTCTCTGA 1209 0.5079 MRVDHISNLCNIEAGLLLIYCSLGVTFFFSGGLRILEMGKGFKLRFSLIHSLQFCRSRNRSALPESPVPASHRLSTVNRKGLDIAFPSVPDPPPSTPWHPFRRRRVKTVPMGCGCRRGSGVRSETSYDCDTESVEYSWKKDGKWHVISRVYEDGPRRKICYSPFPGESDGDLSPNQPQKMAKEKKVRKKKKKGTVPSVRTSTSSGDSGWFSSEGGDYDEETETLLSSSRSFSNDSSFEFNHPLETISEESKSVVGKRDRMNNSKKARRLKRHISKNCRTGSSSSSSSGSGNPKTTSSPEAESPARVSVYQGRIPCRLDGKVRESFAVVKKSKDPYEDFKKSMVEMIMEKQMFETKDLEQLLQCFLSLNSPQHHGIIVEAFSVVWEGLFCKSPPMARRVSRCL* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1039 402 MobiDBLite consensus disorder prediction 196 210 - -
Vvi18g1039 402 Pfam Transcriptional repressor, ovate 331 388 IPR006458 -
Vvi18g1039 402 MobiDBLite consensus disorder prediction 162 305 - -
Vvi18g1039 402 MobiDBLite consensus disorder prediction 224 247 - -
Vvi18g1039 402 ProSiteProfiles OVATE domain profile. 327 386 IPR006458 -
Vvi18g1039 402 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 185 390 IPR038933 GO:0045892
Vvi18g1039 402 MobiDBLite consensus disorder prediction 261 275 - -
Vvi18g1039 402 MobiDBLite consensus disorder prediction 276 303 - -
Vvi18g1039 402 NCBIfam uncharacterized plant-specific domain TIGR01568 325 387 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1039 Vvi-Chr18 10516738 10517946 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vvi18g1039 Ovate 1.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1039 - - vvi:100252240 668.692