Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1034 ATGGATGCACTTCAGAGGAATGACTCATCCCCAGGACAAAAGATGGCAGAAGGTCTTCTGATTCTTGCTCAGCAATGTATGGAAATGACTCCATCTGAGTTTCGCATCAAATGTGAAACAATTGTCCAAGGTCTGACGGAGAAAAGGCAACATTGTCAAACGGCATTTCTGAAGTGGCTCTTCACACGCATGCTTTTTATATTGACACGCTGTACTAGACTGTTGCGGTTTCAGAAAGACAGTGAGCCGATTGATGAGAAATCTCTTCATAACTTCACAAAGTGTTTGGAGAGCATTCCTGCTGTTGAAATGAACTGGGCGCCCTATTCCAGAATTGTTGATTCTGGCTCAGATTATGATAGTAATGGGAAGAGTGATGCCAAACATGAATTACAGTGGCGAAACAGGGTATCTTCTCTCCTTGAGCAAACTTGGTGCAGGTCTGAAGAGCCAGCTGACAAGAGTGGTATAACTTCTAGAAAAGATAGCATGGTTTTGGTACAAAAGCCACTGTCTCAAAATTCTCAAATTGATTTCCTTCCACATATTGAACAAGATGGTGATTACCCTGGGAAGTCAATGAACAGTTTTGAGGATGGCTCTCTTCATGAGCCAGAACGGGGTTTAGATGGATCTGATTCGGTAATTTGTCGGATATGTGAGGAAAATGTTCCTACTTCTCATTTGGAATCTCATTCTTATATATGTGCTTATGCAGATAAGTGTGATTTAAAATATCTAGATATAGATGAACGCCTTTCAAAACTTGCTGAGATTTTGGAACAAATTATAGAGTCACGTAATCTGAATTTTCAGGCATCATTTTGCAGCCCTGAAAATTCAAGAATGCAAATTACAAACTCTGCTGTTATATCTGAAGGTTGTTCTCCCAAGATAAGTGAGTGGCGAAATAAAGGTGTGGAAGGGATGTTTGAGGACCTTCATGAGATGGACACTGCCTGCATAGATGATTCCTACCTTACAAACCCCCTTAACTTGAAGGGCCACTGGGGTACAAAGCTTAGCCAGTATGGTGCACCCTCCTCAACTGGAAGCATGACATCAATGTCCTCCACAAATACCCCGAGAGCAGGTCATTTTGACTTATTCTGGCTAGAGCACAACAATCCTTCTAAGCTGGAGGATGTGCAACAGATGGCTGACCTTGCAGACATTGCCCGCTGTGTGGCAGGCACAGATCTATCTAAAGAAGGATCCTGTGACTTTTTGCTCGCCTGTATGGAAGACTTACAGGATGTTTTACAGAATACCAAGCTCAAATCTCTTGTAATAGACACATTTGGAGGCCGGATAGAGAATCTTCTAAGAGAAAAGTATATTCTCGCTTGTGAATTAGCAGATACAAAAAGTCCCAAGAGTGATAACAGAATTAAGGAGAGCTCTAGGCTTTTGTTTGATAATGCATCCCATAGTAGTACAATGTCAACTCCTCTACATCCCTTACATAAAGAACGGACAAGCATTGATGATTTTGAGATTATCAAACCAATTAGCAGAGGTGCCTTTGGTAAAGTGTTCCTTGCACGAAAGCGAACAACAGGAGATTTATTTGCAATAAAGGTCCTCAAGAAATTGGATATGATACGGAAAAATGATATTGAACGGATATTAGCAGAGCGTAACATACTTATTACAGTTAGAAACCCTTTTGTGGTTCGCTTTTTTTATTCATTCACCTGTAGAGATAATGTCTATTTGGTTATGGAATATCTTAATGGAGGTGATCTATACTCTTTGCTCAGAAAACTCGGTTGCCTTGAAGAAGATGTAGCTCGTATATATATAGCAGAACTGGTCCTTGCTTTAGAATACCTGCATTCTCTTGGCATAGTGCATCGTGATCTGAAACCAGACAATATATTGATTGCACATGATGGGCACATAAAGCTAACAGACTTTGGATTATCAAAAATTGGCCTCATAAACAGCACAGTTGATTTATCGGGGCCCGAGACAGATGGAAGCACTGATGCTTTTCTAGATTCCCTTAATCTGCACACTCAACAAACAGATGATAGACATCGACAATCAGCTGTTGGGACACCTGACTACTTGGCTCCAGAAATCCTTCTTGGAACAGAGCATGGTTATGCTGCGGACTGGTGGTCAGTGGGAATTATCCTATTTGAATTAATTACTGGAGTTCCACCATTCACCGCTGAGCATCCAGAGATAATCTTCGACAACATTCTTAACAGGAAAATCCCCTGGCCTTCTGTTCCTGGTGATATGTCCTATGAGGCTCAAGACTTGATTAACAGGTTTCTTATTCATGATCCAGATCTGCGCCTCGGAGCAAATGGATTGTCAGAGGTGAAAACACATCCTTTTTTCAAGGGAGTTAACTGGGACACCCTTGCATTACAAAAGGCCGTCTTTGTACCACAGCCTGATAGTGCAGATGATACAAGTTATTTCGTTTCACGGTACTCTCAAATTCCTAGTGGGTTGCCAGATGAACAGGACTGTAGTGATTCTGCTACTGATTCTAGTGACCTATACTCAAATTCTGGACTTGAGATGGATGAATGCGGTGATCTGGCGGAGTTTGATTCTTCCCCTCTGAACCTATCATTGATAAACTTCTCTTTCAAGAATCTGTCGCAGTTGGCATCCATTAATTATGACGTGCTCTTGCAGACTGGGAAGGATCCAACAAAGTGCAGTCCATCCAAATCTCGAGACACTTAA 2712 0.4152 MDALQRNDSSPGQKMAEGLLILAQQCMEMTPSEFRIKCETIVQGLTEKRQHCQTAFLKWLFTRMLFILTRCTRLLRFQKDSEPIDEKSLHNFTKCLESIPAVEMNWAPYSRIVDSGSDYDSNGKSDAKHELQWRNRVSSLLEQTWCRSEEPADKSGITSRKDSMVLVQKPLSQNSQIDFLPHIEQDGDYPGKSMNSFEDGSLHEPERGLDGSDSVICRICEENVPTSHLESHSYICAYADKCDLKYLDIDERLSKLAEILEQIIESRNLNFQASFCSPENSRMQITNSAVISEGCSPKISEWRNKGVEGMFEDLHEMDTACIDDSYLTNPLNLKGHWGTKLSQYGAPSSTGSMTSMSSTNTPRAGHFDLFWLEHNNPSKLEDVQQMADLADIARCVAGTDLSKEGSCDFLLACMEDLQDVLQNTKLKSLVIDTFGGRIENLLREKYILACELADTKSPKSDNRIKESSRLLFDNASHSSTMSTPLHPLHKERTSIDDFEIIKPISRGAFGKVFLARKRTTGDLFAIKVLKKLDMIRKNDIERILAERNILITVRNPFVVRFFYSFTCRDNVYLVMEYLNGGDLYSLLRKLGCLEEDVARIYIAELVLALEYLHSLGIVHRDLKPDNILIAHDGHIKLTDFGLSKIGLINSTVDLSGPETDGSTDAFLDSLNLHTQQTDDRHRQSAVGTPDYLAPEILLGTEHGYAADWWSVGIILFELITGVPPFTAEHPEIIFDNILNRKIPWPSVPGDMSYEAQDLINRFLIHDPDLRLGANGLSEVKTHPFFKGVNWDTLALQKAVFVPQPDSADDTSYFVSRYSQIPSGLPDEQDCSDSATDSSDLYSNSGLEMDECGDLAEFDSSPLNLSLINFSFKNLSQLASINYDVLLQTGKDPTKCSPSKSRDT* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1034 903 MobiDBLite consensus disorder prediction 185 208 - -
Vvi18g1034 903 Gene3D Phosphorylase Kinase; domain 1 495 833 - -
Vvi18g1034 903 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vvi18g1034 903 ProSiteProfiles AGC-kinase C-terminal domain profile. 786 881 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi18g1034 903 SUPERFAMILY Protein kinase-like (PK-like) 495 820 IPR011009 -
Vvi18g1034 903 FunFam Microtubule associated serine/threonine kinase 2 582 802 - -
Vvi18g1034 903 CDD STKc_MAST_like 504 790 - -
Vvi18g1034 903 ProSiteProfiles Protein kinase domain profile. 498 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1034 903 SMART serkin_6 498 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1034 903 Gene3D Transferase(Phosphotransferase) domain 1 578 802 - -
Vvi18g1034 903 PANTHER SERINE/THREONINE-PROTEIN KINASE 262 822 - -
Vvi18g1034 903 Pfam Protein kinase domain 498 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g1034 903 MobiDBLite consensus disorder prediction 823 842 - -
Vvi18g1034 903 FunFam probable serine/threonine protein kinase IREH1 496 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1034 Vvi-Chr18 10446349 10464840 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1034 2 903 AGC Kinase Gene Family AT1G45160 62.004 0.0 1051
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_MAST Vvi18g1034 Pkinase 2.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1034 - - vvi:100259179 1819.67