Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1030 ATGGTGGAGTTAGATATTTCGTCACCAATGACGGTTTCTACCGCTTCGAGAGAAGCCAGTGTAACTTCTTCTGGTAATCAGACGGCACCACAACCAGTGGCACCAACGAAGAAGAAGCGGAATCTCCCTGGAACGCCAGATCCGGATGCGGAGGTGATCGCTTTGTCACCCAAAACCCTAATGGCAACGAACCGGTTCGTCTGCGAGATCTGCAACAAAGGGTTCCAACGCGACCAGAACCTTCAACTTCACCGGCGCGGCCACAACCTCCCATGGAAGCTTCGGCAAAGAACAAGCAAAGAGGTTCGGAAGCGAGTATACGTTTGTCCCGAACCTACCTGTGTTCATCACGATCCGACGAGAGCGCTAGGAGATCTCACCGGCATAAAAAAGCATTTTTGTAGAAAACATGGCGAGAAGAAGTGGAAGTGCGAGAGGTGCTCCAAGAAGTACGCCGTGCAGTCAGATTGGAAGGCGCATTTGAAAACTTGCGGTACCAGAGAATACAAATGCGATTGCGGAACTTTGTTTTCGAGGAGGGATAGCTTCATCACACACAGGGCTTTCTGTGATGCTCTAGCTCAGGAGAGTGCTAGAGCGCAGGTCCTTCCCAGTACCAACACTGAGGAAAATCCAGAAATTGAGACAGCTGTTTCGTCATCCCCAACTGCTCTCTCTCCGTCGACTACTGTGCTGTCCATTCAAAGTCCTGATATGACGGAAAATCCGGTGGGAGTGTTGCAGCAAGCACCAGCGACTATATCGTTAACCACAGGCACAGTGACCAGCTCCAGCAGCAGCAGTACCAGTGTATTTGCAAGTATCTTTGCTCCTTCCACAACACCAGTGACATCCCAGCCACCCCAATCATCGTCCACATTCTCCGATCTAATATGCGCAATGGGTCGCTCCAAGCGTTCCACCACCCTACCATCATCTTCCACGGCAGAGCCCACCCTCCGTCTCTCCTCTTCTCTATACCTATCCAACAGTGCCTCCTCCCTCTTTCCAACCCCTGATCAGAACCATCGGCACTACGCTCCATCTCCACAGCCGGCAATGTCGGCTACCGCATTATTGCAGAAGGCAGCACAAATGGGGGCAGCAGCATCAAACGCGTCCTTGCTTCGGGGCTTAGGATTGGCAATGTCACCGTCTTCGTCTGCACAGCAAGATAGCAGCACCACCCAGTGGAGCGGGCATGTAAAGGCAGATAGCAATCCGGTAGGAGCTGGGCTGGGATTGGGGCTTCCCTCGGAGGGAGGCCCTGCTTTAACCGGGCTAATGATGAGTCCATCATCGCTATTTGTGAACAAGCCAACCACTCTTGATCTTCTGGGGCTGGGTATGGTTCCTGGTGGCGCTTCCACGGCTGGACTCTCTGCCCTGCTTACTTCTATCAGCGGTGGCGGCCTTGATATTGCAGCTGCCGGATCCCCTTTTGGAGGAGCAGCAGCTGCTACTGCCGAGGCTGCACCTGATAGAAAGCCTAATGGGCCTGCTCTCCTATAG 1512 0.5324 MVELDISSPMTVSTASREASVTSSGNQTAPQPVAPTKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPTRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHLKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAQESARAQVLPSTNTEENPEIETAVSSSPTALSPSTTVLSIQSPDMTENPVGVLQQAPATISLTTGTVTSSSSSSTSVFASIFAPSTTPVTSQPPQSSSTFSDLICAMGRSKRSTTLPSSSTAEPTLRLSSSLYLSNSASSLFPTPDQNHRHYAPSPQPAMSATALLQKAAQMGAAASNASLLRGLGLAMSPSSSAQQDSSTTQWSGHVKADSNPVGAGLGLGLPSEGGPALTGLMMSPSSLFVNKPTTLDLLGLGMVPGGASTAGLSALLTSISGGGLDIAAAGSPFGGAAAATAEAAPDRKPNGPALL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1030 503 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vvi18g1030 503 Gene3D Classic Zinc Finger 121 200 - -
Vvi18g1030 503 MobiDBLite consensus disorder prediction 1 49 - -
Vvi18g1030 503 Gene3D Classic Zinc Finger 44 112 - -
Vvi18g1030 503 MobiDBLite consensus disorder prediction 383 404 - -
Vvi18g1030 503 MobiDBLite consensus disorder prediction 201 237 - -
Vvi18g1030 503 FunFam protein indeterminate-domain 12-like 45 113 - -
Vvi18g1030 503 MobiDBLite consensus disorder prediction 7 34 - -
Vvi18g1030 503 Pfam Zinc-finger of C2H2 type 66 88 - -
Vvi18g1030 503 MobiDBLite consensus disorder prediction 383 403 - -
Vvi18g1030 503 SUPERFAMILY beta-beta-alpha zinc fingers 65 162 IPR036236 -
Vvi18g1030 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vvi18g1030 503 SMART c2h2final6 142 162 IPR013087 -
Vvi18g1030 503 SMART c2h2final6 66 88 IPR013087 -
Vvi18g1030 503 SMART c2h2final6 107 137 IPR013087 -
Vvi18g1030 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 454 IPR031140 -
Vvi18g1030 503 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1030 Vvi-Chr18 10395587 10398012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1030 2 466 IDZ Gene Family AT5G66730 53.786 1.50e-154 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi18g1030 zf-met 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1030 K25869 - vvi:100260826 884.019