Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1025 ATGTCTGCCAACAAGAATCAGCAGGGAGGAGAAGAGATGTTTGGAGTGGAGGATGTTATAGGCGAATGCAAGACATTCTACTTTGCAGGAAAGGAAACGACTGCTAATCTTTTGACTTGGGCTCTTCTTCTTCTAGCTTTTCATCAAGAATGGCAAGACAAAGCACGGGAAGAAGTGGTTCGCATCTATGGACACAATGCGCCTTCTGCAGCAGAGAATTTAAACGACCTTAAAATTGTAAGCATGATACTCAATGAAACACTTCGACTCTACCCCCCTGTTGTGGCGATGACAAGGAAAGTATCGAAAAATGTCAAGCTAGGGAGTCTCGATATTCCTTCAAACACGCAACTGTACTTGGTCATGACTGCTGTTCATCACGACCCTAAAATATGGGGTGAAGATGCTAATGATTTCAATCCACTGAGATTTAAGGAACCTCGGAAGCATCTAGCCTCGTTTTTCCCCTTTGGGTTGGGCCCCAGGATCTGTGTAGGTCAAACTCTTGCAGTGGTTGAGGCAAAAATTGCCCTCTCTATGATCGTCCAACATTATTCTTTCGAGTTATCATCAACATATGTTCATGCCCCAATGCTGTTTATCACCCTGCAGCCTCAGTATGGTGCTCACATTCTCTTTAGAAGGATTTTAAGCTGA 657 0.4384 MSANKNQQGGEEMFGVEDVIGECKTFYFAGKETTANLLTWALLLLAFHQEWQDKAREEVVRIYGHNAPSAAENLNDLKIVSMILNETLRLYPPVVAMTRKVSKNVKLGSLDIPSNTQLYLVMTAVHHDPKIWGEDANDFNPLRFKEPRKHLASFFPFGLGPRICVGQTLAVVEAKIALSMIVQHYSFELSSTYVHAPMLFITLQPQYGAHILFRRILS* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1025 218 Gene3D Cytochrome P450 1 215 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 SUPERFAMILY Cytochrome P450 5 214 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 PRINTS E-class P450 group I signature 164 187 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 PRINTS E-class P450 group I signature 18 35 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 PRINTS E-class P450 group I signature 38 64 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 PRINTS E-class P450 group I signature 154 164 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 157 166 IPR017972 GO:0005506|GO:0016705
Vvi18g1025 218 PANTHER CYTOCHROME P450 FAMILY MEMBER 14 209 - -
Vvi18g1025 218 PRINTS P450 superfamily signature 155 164 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 PRINTS P450 superfamily signature 82 93 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 PRINTS P450 superfamily signature 164 175 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 PRINTS P450 superfamily signature 29 46 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi18g1025 218 Pfam Cytochrome P450 6 193 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1025 Vvi-Chr18 10356445 10357244 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1025 1 218 Cytochrome P450 AT1G75130 59.174 1.19e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1025 - - vvi:100257474 427.557