Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1019 ATGGGGGATGGTGAGGAAAGCACACCTCCCAAGTCTTCTAAACCACCTGCTTCAACACAGGAGACACCATCAACCCCTTCTTATCCTGACTGGTCAACATCTATGCAGGCCTACTATGGTGCTGGAGCTACTCCGCCTCCTTTTTTCCCTTCTCCTGTTGCACCCCCATCCCCTCATCCGTACCTATGGGGAGGTCAGCATCCTATGATGCCACCATATGGAACTCCACTTCCATACCCAGCTCTCTATCCTCGTGGGGCCCTCTATGCTCATCCTAGCATGGCTACGGCTCAGGGTGTGGCACTGACAAATACCGACATGGAAGTAAAGACCCCTGATGGAAAAGACCCAGCATCAATTAAAAAATCAAAGGCAGCTTCAGGAAACATGGGTTTGATTAGTGGAAAATCTGGGGAAAGCGGAAAGGCAGCTTCAGTTTCTGGCAATGATGGTGCTTCACAAAGTGGGGAGAGTGGTAGTGAGGCCTCATCAGATGCGACTGATGAGAATGCTAACCAAGCATCTTCTGCAGTAAAGAAGAGAAGCTTCAACCTTGCTGATGGATCAAATGCAAAGGGTAACAGTGCTGCTCAGTACACTGGTGGAAATCATTCAGCCTCAGTTCCAGGCAAGCCTGTGGTACCTATGCCTACAACCAGTTTAAATATTGGGATGGACCTGTGGAATGCATCCCCTGCTGGAGGCACACCCATGAAGACAAGACCACAGTCATCTGGTGCCTCACCTCAAGTGGCTTCAGCAACTATAGTTGGACGTGAAGGCATGTTACAGGATCATCAATGGATTCAAGATGAACGTGAACTCAAACGACAAAGGAGAAAGCAATCCAATAGGGAGTCAGCTAGGAGATCAAGATTGCGTAAGCAGGCTGAATGTGAAGAATTACAATCAAAGGTTGAAATTTTGAGCAATGAGAATCATGTGCTGAGAGAGGAGCTGCATAGGCTTGCTGAGCAGTGCGAGAAGCTTACATCTGAGAATAATTCCATAATGGAGGAGTTGACACAATTGTATGGGCCAGAGGCAACATCTAGCCTTCAAGATAACAACCACAACTTGGTTCTCCATCCTATCAATGGTGAAGACGATGGCCATGTACAAGATGCTTCCCCTCTAAACAACTCCAGTTCCACGTCTGATCAAAATGGGAAATTCAGCTCCAATGGGAAGATTTGA 1197 0.4754 MGDGEESTPPKSSKPPASTQETPSTPSYPDWSTSMQAYYGAGATPPPFFPSPVAPPSPHPYLWGGQHPMMPPYGTPLPYPALYPRGALYAHPSMATAQGVALTNTDMEVKTPDGKDPASIKKSKAASGNMGLISGKSGESGKAASVSGNDGASQSGESGSEASSDATDENANQASSAVKKRSFNLADGSNAKGNSAAQYTGGNHSASVPGKPVVPMPTTSLNIGMDLWNASPAGGTPMKTRPQSSGASPQVASATIVGREGMLQDHQWIQDERELKRQRRKQSNRESARRSRLRKQAECEELQSKVEILSNENHVLREELHRLAEQCEKLTSENNSIMEELTQLYGPEATSSLQDNNHNLVLHPINGEDDGHVQDASPLNNSSSTSDQNGKFSSNGKI* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1019 398 CDD bZIP_plant_GBF1 277 327 IPR045314 GO:0003700|GO:0006355
Vvi18g1019 398 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 380 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vvi18g1019 398 SMART brlzneu 272 336 IPR004827 GO:0003700|GO:0006355
Vvi18g1019 398 MobiDBLite consensus disorder prediction 140 205 - -
Vvi18g1019 398 MobiDBLite consensus disorder prediction 107 252 - -
Vvi18g1019 398 Gene3D - 275 331 - -
Vvi18g1019 398 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 274 337 IPR004827 GO:0003700|GO:0006355
Vvi18g1019 398 MobiDBLite consensus disorder prediction 375 398 - -
Vvi18g1019 398 Coils Coil 285 340 - -
Vvi18g1019 398 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Vvi18g1019 398 MobiDBLite consensus disorder prediction 236 252 - -
Vvi18g1019 398 SUPERFAMILY Leucine zipper domain 275 331 IPR046347 GO:0003700|GO:0006355
Vvi18g1019 398 FunFam BZIP transcription factor 274 325 - -
Vvi18g1019 398 Pfam Disordered region downstream of MFMR 119 233 - -
Vvi18g1019 398 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 279 294 IPR004827 GO:0003700|GO:0006355
Vvi18g1019 398 MobiDBLite consensus disorder prediction 273 295 - -
Vvi18g1019 398 MobiDBLite consensus disorder prediction 11 39 - -
Vvi18g1019 398 MobiDBLite consensus disorder prediction 1 77 - -
Vvi18g1019 398 MobiDBLite consensus disorder prediction 362 398 - -
Vvi18g1019 398 Pfam bZIP transcription factor 272 334 IPR004827 GO:0003700|GO:0006355
Vvi18g1019 398 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1019 Vvi-Chr18 10309606 10313551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1019 1 356 bZIP Transcription Factor Family AT4G36730 52.646 3.96e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vvi18g1019 MFMR_assoc 7.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1019 K09060 - vvi:100250676 758.059