Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1005 ATGATAAATGGATCTCCTCTCCCCGACAACGTTATGATAGAAGTGAATCCTTACCAGCATAACCCCTCATGTTTATCTGATAGATTTTGGTACTTAACAAGCTCTGAGGACACCAAATTTGCAGAGGGATTCTGGAAGCCCAAGGGTGAGCCCTATGAGATATTTTCGAACTCTTCTATCACTGGTTGGAGAACTACTTTTGAATTCTACGAAGGTACCACCCCACATGTCCTTAAAACCGACTGGGTGTTGCAACAGTACAAGATAACTCAGAAGGGACAGTCCAAAAACATCAAGCCAATGGCCTCCAGTTCACTCTGTAGAGTCTTCCAAAGCAGGGGACAAAGTTCAAGCCATGAAATGCAGAAGGAATTGGGGGTTGCAAATGTTGCTGATGAAAACCACACTTGTTCCAAGCCTTCTGTGGTTTCAAATACTGACAATAGCACTGGGCAAGGTTCCAAAAGCGAGTCTCAGGTGCAACATGGCAATGGTGAGACTGGACTATTGGCTGCGCCAGAAAGATCTCTGAATCACCCTGTAGACAACCTGCCTGAAATTGATTATTTTTCTGATGGTGACTTTTTGGAGTTGGGGGATCTTGCTGACCCAGTATCACCTTCTTCCAGTTCAGACAATTCTAGTTGCCTAAGCCAGACATCAGATGAATGTTTTGATTCATTAGCCTTGTTGCGAGATTTAGAATGTGACAAGGATGTGGGTTGCAAGTTTAGTGTTGCTGCATTGGTCATGCCAGACAAGGTTGTTTTGCAGCCAGCCAGTTCAGGATCTCTTACTTGTGATGACAGAAGGAAGTTACCGGCAGAAGGACCCCCCAAAACTGATAGTTCTTTACTTGGTTCAACAAAACTGTCTGAGAAGAAGGGCTTGAAGCGTGCAATTGCAACTCAGGAAGCAGACAATAAGGTGGAAGGTCCATCATCAAATCCTCATAATTTGGTGGCATCATCTGGCAGCAACAAAGCAGCATCCTCAGATGAAAAAGGGAAAGCTGCTGCTGACAGAAAGAAGAAGCTAAAGAAGTATTTGTGCTTCATGCCATTCTAG 1068 0.4429 MINGSPLPDNVMIEVNPYQHNPSCLSDRFWYLTSSEDTKFAEGFWKPKGEPYEIFSNSSITGWRTTFEFYEGTTPHVLKTDWVLQQYKITQKGQSKNIKPMASSSLCRVFQSRGQSSSHEMQKELGVANVADENHTCSKPSVVSNTDNSTGQGSKSESQVQHGNGETGLLAAPERSLNHPVDNLPEIDYFSDGDFLELGDLADPVSPSSSSDNSSCLSQTSDECFDSLALLRDLECDKDVGCKFSVAALVMPDKVVLQPASSGSLTCDDRRKLPAEGPPKTDSSLLGSTKLSEKKGLKRAIATQEADNKVEGPSSNPHNLVASSGSNKAASSDEKGKAAADRKKKLKKYLCFMPF* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1005 355 MobiDBLite consensus disorder prediction 260 340 - -
Vvi18g1005 355 MobiDBLite consensus disorder prediction 134 164 - -
Vvi18g1005 355 SUPERFAMILY NAC domain 2 111 IPR036093 GO:0003677|GO:0006355
Vvi18g1005 355 MobiDBLite consensus disorder prediction 308 331 - -
Vvi18g1005 355 PANTHER NAC TRANSCRIPTION FACTOR 56 3 150 - -
Vvi18g1005 355 Gene3D NAC domain 1 116 IPR036093 GO:0003677|GO:0006355
Vvi18g1005 355 ProSiteProfiles NAC domain profile. 1 112 IPR003441 GO:0003677|GO:0006355
Vvi18g1005 355 Pfam No apical meristem (NAM) protein 2 88 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1005 Vvi-Chr18 10213823 10217285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1005 2 125 NAC Transcription Factor Family AT3G17730 28.169 1.32e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi18g1005 NAM 5.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1005 - - vvi:100252228 707.212