Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0997 ATGGTAGCAACAGTGATGCTGGAATGCCCTGTTTGTAAAGCTCTTGTTGAGGAGGAGAAGTTGGTTCCCCTCTATGGTCGGGGAAAGACATCAACAGATCCAAGATCGAAGTCCATTCCAGGTATTAACATTCCAAATCGTCCAACAGGCCAGCGACCTGAAACGGCTCCTCCACCAGATGCAAATCATTTTATGCAACATGGGTTTGGGTTCATGGGAGGCTTAGGGGGATTTGCACCAATGGCAACTGCAAGATTTGGGAACTTCACATTGTCTGCGGCTTTTGGTGGGCTTTTCCCATCGCTATTTAACCTTCAAGTGCATGGATTCCCTGATGCTACCATGTATGGGCCAGCTGCTGGTTTCCCATATGGATTTTCTAATTCATTTCATGGTGGACATGCTCATGGATTCCCTCAGCATCCACCAACTCAAGGGCAACAAGCAGATTACTATCTGAAGATGCTGTTCTTGATGATTGGTGTCTTTGTGATCATTGCCCTAATTTGGTCATAG 516 0.4632 MVATVMLECPVCKALVEEEKLVPLYGRGKTSTDPRSKSIPGINIPNRPTGQRPETAPPPDANHFMQHGFGFMGGLGGFAPMATARFGNFTLSAAFGGLFPSLFNLQVHGFPDATMYGPAAGFPYGFSNSFHGGHAHGFPQHPPTQGQQADYYLKMLFLMIGVFVIIALIWS* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0997 171 MobiDBLite consensus disorder prediction 31 50 - -
Vvi18g0997 171 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 8 166 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vvi18g0997 171 MobiDBLite consensus disorder prediction 26 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0997 Vvi-Chr18 10146222 10146856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0997 8 154 C3H Transcription Factor Family AT1G19310 66.447 5.89e-63 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0997 K10666 - vvi:100259073 353.214