Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0991 ATGGGTTGGCTTAACAAAATTTTTAAAGGGTCAAGCCATAAAATTTCAGAAGGGAATTATCATGGGAGATATCAAGGGGATACCGTTCAAAATGAACCTTCTTGTTCAGGGGATGTGTGGGCAGAGACTGAGAATGAAGATATAGACCGTGCTATTGCATTATCCCTTTCAGAAGAAGAACAAAAAGGAAAAAAAGTGATTGATAATGAATTTCAATTGGAGGAAGATGAACAACTTGCTAGAGCTATACAAGAGAGCTTGAATATTGAGTCTCCTCCACAACATGGAAATGGAAATGGAAATGGAAATATTTATCAACCCATTCCATTCCCCTACTCAACAGGGTTCAGGATCTGTGCTGGTTGCAATACTGAGATTGGTCATGGACGTTTTCTAAGTTGCATGGGTGCAGTTTGGCATCCAGAATGTTTCAGATGCCACGGTTGCGGCTACCCAATTTCTGATTATGAGTATTCTATGAATGGGAATTACCCTTATCACAAATCTTGCTACAAGGAGCACTATCACCCAAAATGTGATGTTTGCAAGCACTTTATTCCAACGAACCCTGCTGGTCTTATTGAATATAGGGCGCATCCTTTTTGGGTTCAGAAGTACTGCCCTTCTCATGAGCATGACAGAACACCTAGATGCTGTAGCTGTGAGAGAATGGAGCCACGGGACACAAGATATGTTGCCCTTAATGATGGTCGGAAGCTCTGCCTGGAGTGTCTGGACTCTGCAATCATGGATACCAATGAATGTCAACCCCTCTATCTTGATATACAAGAGTTTTATGAAGGTTTAAATATGAAAGTGCAGCAGCAAGTTCCATTACTCTTGGTCGAAAGACAAGCACTGAATGAAGCCATGGAAGGAGAAAAGAGTGGCCACCATCACATGCCTGAGACTAGGGGACTTTGTCTTTCTGAAGAACAAACTGTCAGCACTATTTTGAGGCGTCCTAAGATTGGGACTGGAAACCGAGTCATGAATATGATAACAGAGCCTTGTAAACTAACACGTCGTTGCGATGTGACTGCAGTTCTCATTTTGTATGGCCTTCCTAGGTTGCTAACTGGGTCGATCCTTGCTCACGAGATGATGCATGCCTGGCTCCGACTAAATGGTTATCGAACTCTTGCACAAGATGTGGAAGAAGGTATCTGTCAGGTGCTAGCTTATATGTGGCTAGATGCTGAGCTGACATCTGGATCTGGAAGTAATGTTCCATCAACATCATCTGCTTCCACGTCTTCAAAGAAGGGTGCAGGATCTCAATGTGAGAGGAAGCTTGGGCAGTTCTTCAAACACCAGATTGAATCAGACACATCCCTTGTCTATGGAGCTGGATTCAGAGCTGGCCATCAGGCAGTGCTTAAATATGGCCTTCCAGCCACTCTAAAGCATATTCATCTGACAGGCAATTTTCCATATTGA 1440 0.4319 MGWLNKIFKGSSHKISEGNYHGRYQGDTVQNEPSCSGDVWAETENEDIDRAIALSLSEEEQKGKKVIDNEFQLEEDEQLARAIQESLNIESPPQHGNGNGNGNIYQPIPFPYSTGFRICAGCNTEIGHGRFLSCMGAVWHPECFRCHGCGYPISDYEYSMNGNYPYHKSCYKEHYHPKCDVCKHFIPTNPAGLIEYRAHPFWVQKYCPSHEHDRTPRCCSCERMEPRDTRYVALNDGRKLCLECLDSAIMDTNECQPLYLDIQEFYEGLNMKVQQQVPLLLVERQALNEAMEGEKSGHHHMPETRGLCLSEEQTVSTILRRPKIGTGNRVMNMITEPCKLTRRCDVTAVLILYGLPRLLTGSILAHEMMHAWLRLNGYRTLAQDVEEGICQVLAYMWLDAELTSGSGSNVPSTSSASTSSKKGAGSQCERKLGQFFKHQIESDTSLVYGAGFRAGHQAVLKYGLPATLKHIHLTGNFPY* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0991 479 FunFam Protein DA1-related 1 113 172 - -
Vvi18g0991 479 SMART lim_4 118 170 IPR001781 -
Vvi18g0991 479 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 74 93 IPR003903 -
Vvi18g0991 479 Pfam Protein DA1 268 473 IPR022087 -
Vvi18g0991 479 SMART uim 74 93 IPR003903 -
Vvi18g0991 479 SMART uim 43 62 IPR003903 -
Vvi18g0991 479 ProSitePatterns LIM zinc-binding domain signature. 119 153 IPR001781 -
Vvi18g0991 479 PANTHER PROTEIN DA1-RELATED 2 3 479 IPR045218 -
Vvi18g0991 479 Gene3D - 40 98 - -
Vvi18g0991 479 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 43 62 IPR003903 -
Vvi18g0991 479 CDD LIM_DA1 119 171 - -
Vvi18g0991 479 Pfam Ubiquitin interaction motif 74 87 IPR003903 -
Vvi18g0991 479 Pfam Ubiquitin interaction motif 43 58 IPR003903 -
Vvi18g0991 479 ProSiteProfiles LIM domain profile. 117 177 IPR001781 -
Vvi18g0991 479 Gene3D Cysteine Rich Protein 113 178 - -
Vvi18g0991 479 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 144 - -
Vvi18g0991 479 Pfam LIM domain 119 173 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0991 Vvi-Chr18 10083729 10096726 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi18g0991 DA1-like 2.6e-99 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0991 - - vvi:100253933 984.941