Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0990 ATGTCCCAAAGCTTCCACCAAAGTATCTTCAGTTTCTCAAATGGGTACGAGAGATCCAAGTACCAAGAACAACATCAACCGCTGCAGCATGTAGAAGAGCAAGTATCAGGAGAGCTGCCGGTGTATGAACCCGGCGGGATGCTGTCAGAGATGTTCAGCTTCCCGCCGGGGCCTACTGTGGCCACTGAGATCTTGGAGAATCAGATCTCATCAAATTATAGATGGCCATCGCAGCCCACAGCCGCTAATGATTGTAATAATATTGCTCGAAATCAACATTTCTCGCGCATTAATGCAGACTTAGCAAATCCCATGCAGCTTTCGCTCATGAATCCTCCAGCAAAAACGTCTTCTCCAACTGATACATCTTCTTCTCTACACATGCTACTCCCAAATTCATCCAATTCTCATCTTCAAGGGTTTCAACATGGCGGCACAATGTCTGGGGTCTCCGGTTTGGGAAGCAGTGAGGTCCCTCCCGTTAATTTCAATTGGGTACCTGGTAGAGTCGCCGGAGTTGATGGCACTAGCAAAATTGGAGGCGTTATGGAGAGTCAAGGTCTTTCTTTATCCTTGTCTTCTTCATTGCAGCAGCTGGAAGCAGCCAAAGCGGAGGAATTGAGGTTGGGAAATGGTGGGATCTTCTTTTGCAATCAAGGAGTAGGGGCTTCTTCTAATTTCTATGCTTCGAAGACTTTGGGAACTAATCAGCAGCCCTTGCAATTGCAAGGAATAGTAGATCCAAGTCGTCAGGTTTATGTTGGATATGAATCATCTTTGGGAAACTTGAATATTTTGAGGAATTCTAAGTATGCCAAGGCCGCCCAAGAATTGCTGGAAGAGTTCTGCAGTGTCGGGAGGGAACACTACAAGAATCAGAGGCGTGGAAAGCATAGTATAAACCCTAATTCTGATCCCGGTGGTGGTGGCGGTGCTGCTGCTTCTGGGTCGTCTTCTTCCGTAAAGGATCTTGCACCTTTGTCAGCTGCAGATAAGATTGAACACCAAAGGAGGAAGATCAAACTATTATCCATGCTTGATGAGGTGGATAGTAGATATAACCATTACTGCGAGCAAATACAAGTGGTGGTAAACTCATTTGATTCGAAGATGGGTTTTGGAGCAGCAAATCCTTACACGACCCTAGCTCGAAAGGCAATGTCAAGGCACTTCAGATGCATGAAGGATGCGATATTGGCGCAATTGAAGATTTCATGTGAATTACTTGGGGAGAAAGATGTCATGGCGGCATCTGGATTGAGTAAAGGAGAGACACCAAGATTACGGTTGCTTGATCAAAGCCTGAGGCAGCAAAGAGCCCTTCATCAAATGGGGATGATGGAGCCAGAAGCATGGAGGCCCCAGCGAGGCTTGCCTGAGCGATCTGTCAACATTTTGAGAGCCTGGCTTTTTGAGCATTTCCTGCACCCGTACCCAAGCGACGCAGATAAGCATTTGTTGTCTCGCCAGACTGGTTTATCCAGAAATCAGGTCTCGAACTGGTTCATTAATGCAAGGGTTCGATTGTGGAAACCCATGGTGGAGGAGATGTACCAACAAGATGCCAAGGAAGAAGAAGCCGCTGCATCATCTGAGGATAGAGAAGCCAACCCACAAAATCACCAGAAAAACAGCATCTCCGCACAAACACCAAGGTCTTCCACTCCACCAGCGTCCCAAAGATCCCAAATCAATGCTCAGGAAAACGACCCTTCACTCGACACCATCAATTACAGGAATTGCTTCTCGGGAACCCAAGCAATTACTCAAGCTACCACCACCACCACCACCACCACCACCACCATATCTCAACGTTTTCCGACCACCCATGAAGCCGGCATGCATCAACGGACGGTGGCCGCTGATGACACGTGGTGTCGAGGAAGCGTGTTTGGCGGTGAATATGGGACCACTGATGCCGCATCTCTAGGGACACCCGCTGGTGATGTCTCCCTTACCTTGGGCCTTCGACACGCCGGGAACTTGCCGGACAAGGGCCGGCTGTCGTTACGGGACTTCGGGGCCTGCTGA 2031 0.4865 MSQSFHQSIFSFSNGYERSKYQEQHQPLQHVEEQVSGELPVYEPGGMLSEMFSFPPGPTVATEILENQISSNYRWPSQPTAANDCNNIARNQHFSRINADLANPMQLSLMNPPAKTSSPTDTSSSLHMLLPNSSNSHLQGFQHGGTMSGVSGLGSSEVPPVNFNWVPGRVAGVDGTSKIGGVMESQGLSLSLSSSLQQLEAAKAEELRLGNGGIFFCNQGVGASSNFYASKTLGTNQQPLQLQGIVDPSRQVYVGYESSLGNLNILRNSKYAKAAQELLEEFCSVGREHYKNQRRGKHSINPNSDPGGGGGAAASGSSSSVKDLAPLSAADKIEHQRRKIKLLSMLDEVDSRYNHYCEQIQVVVNSFDSKMGFGAANPYTTLARKAMSRHFRCMKDAILAQLKISCELLGEKDVMAASGLSKGETPRLRLLDQSLRQQRALHQMGMMEPEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLSRQTGLSRNQVSNWFINARVRLWKPMVEEMYQQDAKEEEAAASSEDREANPQNHQKNSISAQTPRSSTPPASQRSQINAQENDPSLDTINYRNCFSGTQAITQATTTTTTTTTTISQRFPTTHEAGMHQRTVAADDTWCRGSVFGGEYGTTDAASLGTPAGDVSLTLGLRHAGNLPDKGRLSLRDFGAC* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0990 676 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 135 540 - -
Vvi18g0990 676 MobiDBLite consensus disorder prediction 520 539 - -
Vvi18g0990 676 FunFam BEL1-like homeodomain protein 4 455 517 - -
Vvi18g0990 676 Pfam Homeobox KN domain 469 508 IPR008422 GO:0003677|GO:0006355
Vvi18g0990 676 ProSiteProfiles 'Homeobox' domain profile. 449 512 IPR001356 GO:0003677
Vvi18g0990 676 MobiDBLite consensus disorder prediction 520 577 - -
Vvi18g0990 676 MobiDBLite consensus disorder prediction 540 577 - -
Vvi18g0990 676 MobiDBLite consensus disorder prediction 290 320 - -
Vvi18g0990 676 Pfam Associated with HOX 265 398 IPR006563 -
Vvi18g0990 676 Gene3D - 455 517 - -
Vvi18g0990 676 SUPERFAMILY Homeodomain-like 453 519 IPR009057 -
Vvi18g0990 676 SMART HOX_1 452 516 IPR001356 GO:0003677
Vvi18g0990 676 SMART prehox3 260 400 IPR006563 -
Vvi18g0990 676 CDD homeodomain 452 513 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0990 Vvi-Chr18 10068627 10075316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0990 260 674 Homeobox Transcription Factor Family AT2G23760 52.008 1.82e-132 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vvi18g0990 POX 5.5e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0990 - - vvi:100243714 1285.78