Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0984 ATGGGGGACTACATCAGCAGCGAGGATGAGTACTATAATGATTATAACGATGATGATCGGGACTCTTTGGATGGGTACCAGCACTTTCGTTTTGAGGGTGGGTGCCAGAATGAGAGTGCGACATCCAGTAAGGTAATTACAAAGGAATCTCTTTTGACAGCACAGAAGGAAGATTTGCATAGAGTAATGGACCTGCTACCATTGGGGGAACACCATGCTAGAAGCTTACTTATTCATTGTCGTTGGGATGTTGAAAGGGTGTTGGCAGTCCTTGTGGAGAAGGGAAAAGAACAGCTATATGCTGATGCGGGTGTGACAGTGGTGGAGCATGATGATCTTTCCTTGTCAAAGTTTTCATCTCCATTAACATGCAATATCTGCGTTGACGATGTATCTACTAACGAGATGACAATAATGGACTGTGGCCACTACTTTTGTAACAATTGCTGGACGGGGTATTTTATTGTGAAGATAAATGATGGTCAGAGTAGACGCATTAGGTGCATGGCATACAAGTGCAATGCTATTTGTGATGAAGCAAAAATCAGAAAGCTAGTAAGTGCAAGAGATCCTAATCTGGCAGAGAGATTCGATCGTTTTCTTTTGGAATCATACATTGAGGATAATAGAAGGGTGAAATGGTGCCCTAGTGTTCCCCATTGTGGGAATGCCATTCGTGTTGAGGTTGATGAATTTTGCGAGGTTGAATGTGCGTGTGGTCTACAATTCTGTTTCAATTGCTCTTCTGAAGCACACTCACCTTGCTCATGCCGGATGTGGGAGCTTTGGGGCAAGAAGAGCCAGGATGGATCAGAGACGGTTAATTGGATTACAGTCCATACAAAGGCCTGCCCAAAATGTCAAAAACCAGTGGAAAAGAATGGCGGTTGCAACCTAGTGAGTTGTATATGTGGACAATCATTTTGTTGGCTGTGTGGTGGTGCCACTGGTAGAGACCATACATGGACAAATATCACTGGTCACAGTTGTGGGCGATATAAAGAAGAGGATGTGAACAAATTGGAGCATGCAAAAAGGGAGCTCTCACGTTATGTTCACTATCATGATCGATACAAAGCTCACACGGATTCTTTTAAGCTTGAAATTAAGCTGAAGGAAACCATACAGGAAAATATATCAAAACTGGAAGAAAGGGATTCAGCATTCAAAGATTTCAGTTGGCTTACAAGTGGACTTAACAGGCTCTTCAGGTCGAGGCGGGTTCTCTCATATTCCTACCCGTTTGCATTTTTCATGTTCGGTGACCTGTTCAATAATGAAATGACCGAGGCAGAAAAGGAAATAAAACAACACTTGTTTGAAGAACAACAGCAACAGCTTGAGGCAAATATTGAGAAGCTTTCATTATTCATAGAGGAGCCATTTCATCAGTACACGGAGGACAAAGTTGCAGAAACAAGAATGAAAATTATGAATATGTCTGCAATCACTGATAACCTCTGCAAAAAGATGTATGAGTGCATTGAGAATGATTTGTTGGGTCCCCTCCAGCAGGCAATTCATATTATAGCTCCTTATAAATCAAAAGGTGTGGAGAAAGCGTCAGAACTTCCGCTTTGTTGGGGGCCCAATGCTGGTGATTCTAGCATAAATGATGAAGGTGGTTGCTCTTCCCGGAAGCGCACTAGGATAGGAAGGTCCTGCAGACAATCTCATCGATCTGAATGGTGCTAG 1695 0.4277 MGDYISSEDEYYNDYNDDDRDSLDGYQHFRFEGGCQNESATSSKVITKESLLTAQKEDLHRVMDLLPLGEHHARSLLIHCRWDVERVLAVLVEKGKEQLYADAGVTVVEHDDLSLSKFSSPLTCNICVDDVSTNEMTIMDCGHYFCNNCWTGYFIVKINDGQSRRIRCMAYKCNAICDEAKIRKLVSARDPNLAERFDRFLLESYIEDNRRVKWCPSVPHCGNAIRVEVDEFCEVECACGLQFCFNCSSEAHSPCSCRMWELWGKKSQDGSETVNWITVHTKACPKCQKPVEKNGGCNLVSCICGQSFCWLCGGATGRDHTWTNITGHSCGRYKEEDVNKLEHAKRELSRYVHYHDRYKAHTDSFKLEIKLKETIQENISKLEERDSAFKDFSWLTSGLNRLFRSRRVLSYSYPFAFFMFGDLFNNEMTEAEKEIKQHLFEEQQQQLEANIEKLSLFIEEPFHQYTEDKVAETRMKIMNMSAITDNLCKKMYECIENDLLGPLQQAIHIIAPYKSKGVEKASELPLCWGPNAGDSSINDEGGCSSRKRTRIGRSCRQSHRSEWC* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0984 564 Pfam IBR domain, a half RING-finger domain 195 257 IPR002867 GO:0008270
Vvi18g0984 564 Pfam IBR domain, a half RING-finger domain 275 315 IPR002867 GO:0008270
Vvi18g0984 564 SUPERFAMILY RING/U-box 267 323 - -
Vvi18g0984 564 Pfam Ariadne domain 334 538 IPR045840 -
Vvi18g0984 564 SUPERFAMILY RING/U-box 195 263 - -
Vvi18g0984 564 FunFam RBR-type E3 ubiquitin transferase 119 209 - -
Vvi18g0984 564 SMART ibrneu5 261 330 IPR002867 GO:0008270
Vvi18g0984 564 SMART ibrneu5 195 257 IPR002867 GO:0008270
Vvi18g0984 564 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 208 IPR013083 -
Vvi18g0984 564 CDD RING-HC_RBR_TRIAD1 123 175 - -
Vvi18g0984 564 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 50 381 IPR031127 GO:0004842|GO:0016567
Vvi18g0984 564 Pfam Zinc finger, C3HC4 type (RING finger) 124 153 IPR018957 GO:0046872
Vvi18g0984 564 ProSiteProfiles Zinc finger RING-type profile. 124 172 IPR001841 -
Vvi18g0984 564 CDD Rcat_RBR_ARI1-like 278 331 - -
Vvi18g0984 564 ProSiteProfiles TRIAD supradomain profile. 120 334 IPR044066 -
Vvi18g0984 564 SUPERFAMILY RING/U-box 120 207 - -
Vvi18g0984 564 Gene3D - 253 500 - -
Vvi18g0984 564 FunFam RBR-type E3 ubiquitin transferase 253 500 - -
Vvi18g0984 564 CDD BRcat_RBR_ANKIB1 202 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0984 Vvi-Chr18 10027000 10031692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0984 63 524 ARIADNE family AT2G16090 67.312 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0984 K11968 - vvi:100243709 1157.51