Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0976 ATGGTGACGCAGATGAGCAAGAAGCGAAAATTTGCGGTTGATGGAGTCTTCTTCGCGGGGCTTAATGAGGTGTTGACCAGGGAGCTTGTTGAGAATGGATACTCGGGCGACGAAGTTAGAGTAACTCCGATGTGCACGGAGATTATCATTCGTGCCACTCAGACTCATAATGTTCTCGGTGAAAAGGGAAAAAAGATTAAGGAGCTGACTTCAGTGGTTCAGAAGAGGTTTGAATTTCTTGAAAATACTTCTTGGAGGACTTGCTATGGTGTTCTAAGGTTTGTTATGGAAAGTGGGGCGAAAGGATGTGAAGTTATTGTGAGTGGGAAGCTTTGTGCTCAGCGTGCCAAGTCAATGAAGTTTAAGGATGGGTACTTGATCTCCTCTGGTCAACCTGTTAAGGATTACATTGACTTAGCTGTGAGGCATGTTCTCAGACAGGGCGTCCTTGGTATCAAGGTCAAAATCATGTTCAACTGGGATCCTAAGGGCAAGCAAAGCCTTACAACACCATTGCCTGATCTGGTGACTATTCAAACACCCAATCATACCTCAATGGCGAAAACCTTGCATGGGCATCTTTGGCATGCAATCTTTGGGTCATGTGTCATTCTTTCATTTCTTCCTCTTTGA 633 0.4471 MVTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGEKGKKIKELTSVVQKRFEFLENTSWRTCYGVLRFVMESGAKGCEVIVSGKLCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHVLRQGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTIQTPNHTSMAKTLHGHLWHAIFGSCVILSFLPL* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0976 210 CDD KH-II_40S_S3 5 83 - -
Vvi18g0976 210 SUPERFAMILY Ribosomal protein S3 C-terminal domain 84 159 IPR036419 -
Vvi18g0976 210 FunFam 40S ribosomal protein S3 1 85 - -
Vvi18g0976 210 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 82 - -
Vvi18g0976 210 Pfam Ribosomal protein S3, C-terminal domain 86 156 IPR001351 GO:0003735|GO:0006412
Vvi18g0976 210 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 81 IPR009019 GO:0003723
Vvi18g0976 210 Gene3D - 67 187 IPR036419 -
Vvi18g0976 210 FunFam 40S ribosomal protein S3 66 188 - -
Vvi18g0976 210 Pfam KH domain 22 83 IPR004044 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0976 Vvi-Chr18 9936300 9937009 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0976 1 183 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 65.581 4.15e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0976 K02985 - vvi:100259512 283.108