Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0971 ATGATCTGTAAAACCCGTCTTCTCCTCTTCTTAGCTCTCTCCATTCTCCCCATGTACGTCATCGCTCACAGCTCAAGCAAGTGCCACCAAGAATGCGGCCACAACAAAACAGTTAAACACCGTCGTTTCCCTTTCATCGGAACCTCCTCCGCCTGCCAAATCCGTCTGAACTGCAGCACAGACGGTGACATCATGGTGGGTGAATTTCCAGTCCGGAGCATATTCCCCGAAAGCATACTGGTCAACCTGGAGGTGAGATGCAACCGCTCGATCAAATCCTTGGACCATCTCTTCAACACAAATTACGCCCCAACTACGCGTAATGGAATTTTACTGAAACACTGCAAATCACCAGCGTCAACATGCACGATCCCAACAACTAAGGTAAACACTCACTTTGAGTCGATAGATTGTGGTTCAGACAACTATAGCATAAGCTGTTATTCTGAGGAACACGAAAATGGTTTCCTCAGTCAAGCTAACGTGAGTAAAAGCCACTGTCAATATCTTTTGTCGTCCATATCCGTCGACGCCTTCAATACATCGTCGGTTGTGTTGGATGTTGGGATTGTTCAATTGGGATGGTGGCTTTTGGGTGAATGCAAATGTCACCAGGAAGCCACATGTACTGAAATCCAGACCCCGGTCGCCGGCCAGCAGGGTTTTCGGTGCAAGTGCAGGGATGGATTCGATGGTGATGGTTACCAGGCCGGAGTGGGCTGCCGGAAAGCCTCTTCTGGGTGCAATCCTTCTAGATACATTTCTGGCCAATGTGGAGGTCCCAGCAGATTTTTTGTTTTAGCTGGAGGGATTGCTCTGATGATCAGTATCAGTGCAATATGCTGTTTTATGCGAAGATGCTTGACTTCGAAAGCTAGAAACAGCACAAGGCGGCGTCTATCTGAAGCTACGGGAAAATGCAGCATTCCTATCTACCCCTACAGAGCAATTGAGAAAGCCACGAGTAGTTTCTCTGAGAAACAAAGGCTGGGAACTGGGGCCTATGGGACAGTTTACTCAGGAAAACTCCATAACCAGTGGGTTGCCATTAAAAGGATCAAACACAGAGATACTGACAGTATTGAGGAAGTGTTGAATGAGATCAAGCTCATTTCTTCAGTGAGCCACCCGAATCTAGTCCGCCTCCTAGGGTGCTCCATAGAAAAAGGTGAACAGATACTTGTCTATGAATTCATGGCCAACGGAACATTGTCTCAGCATTTACAAAGAGAGAGAGGCAATGGGCTTGTCTGGGCAGTTCGCCTGAGCATTGCCACTCAAACCGCTCAAGCCATAGCTCATCTCCACTCTGCTCTCAACCCTCCCATATATCACAGAGATATCAAGTCTAGCAACATACTCTTAGATCACAACTTCATCCCTAAGCTTGCAGATTTTGGTCTTTCAAGACTTGGTATGGCTGAATCCTCCCACATCTCAACCGCCCCTCAGGGAACGCCTGGGTACCTTGATCCTCAGTACCATCAGAACTTCCATCTCTCGGATAAAAGTGATGTTTATAGCTTTGGAGTAGTTCTTGTGGAGATAATAACAGCATTAAAAGTGGTGGACTTTTCTCGGCCTCAGAATGAGGTGAATCTGGCTGCGCTCGCTATTGACAGGATTGGTAAGGGGCGTTTAGATGAGATAATAGATCCATTCCTAGAGCCCCACAGGGATGCTTGGAGCCTTTCTTCTCTGCACAAGGTGGCGGAACTGGCATTCAGATGCCTTGCATTTCACAGGGACATGAGACCTTCTATGATGGAAGTGGCAGCTGAGCTTGAGCAAATTAAACTTTGTAAATGGGCAACTTCAGAGGACAACATGTGCACAGCTTCATCAGAGACATCCTCCTGCTCTTCCTCATCTAATGTAAGCGAGATACCGCTTAGCATGACAGTTGAAAAAGGTGGATTGGGTAGCGAAGGTCTATTTGTGCTTCCTACTAAGGTGATTAGTATGAATTCATTGGGCAGATTGAAGGATACTTCACCTGTTTCAGTGCAGGATCCATGGTTAAGCGGACAGAGTTCACCCTCATCCAACAGTTTGCTGAGTAATATAATTCAGCGACATGCATAA 2085 0.4681 MICKTRLLLFLALSILPMYVIAHSSSKCHQECGHNKTVKHRRFPFIGTSSACQIRLNCSTDGDIMVGEFPVRSIFPESILVNLEVRCNRSIKSLDHLFNTNYAPTTRNGILLKHCKSPASTCTIPTTKVNTHFESIDCGSDNYSISCYSEEHENGFLSQANVSKSHCQYLLSSISVDAFNTSSVVLDVGIVQLGWWLLGECKCHQEATCTEIQTPVAGQQGFRCKCRDGFDGDGYQAGVGCRKASSGCNPSRYISGQCGGPSRFFVLAGGIALMISISAICCFMRRCLTSKARNSTRRRLSEATGKCSIPIYPYRAIEKATSSFSEKQRLGTGAYGTVYSGKLHNQWVAIKRIKHRDTDSIEEVLNEIKLISSVSHPNLVRLLGCSIEKGEQILVYEFMANGTLSQHLQRERGNGLVWAVRLSIATQTAQAIAHLHSALNPPIYHRDIKSSNILLDHNFIPKLADFGLSRLGMAESSHISTAPQGTPGYLDPQYHQNFHLSDKSDVYSFGVVLVEIITALKVVDFSRPQNEVNLAALAIDRIGKGRLDEIIDPFLEPHRDAWSLSSLHKVAELAFRCLAFHRDMRPSMMEVAAELEQIKLCKWATSEDNMCTASSETSSCSSSSNVSEIPLSMTVEKGGLGSEGLFVLPTKVISMNSLGRLKDTSPVSVQDPWLSGQSSPSSNSLLSNIIQRHA* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0971 694 Gene3D Laminin 201 236 - -
Vvi18g0971 694 SUPERFAMILY Protein kinase-like (PK-like) 302 596 IPR011009 -
Vvi18g0971 694 Gene3D Transferase(Phosphotransferase) domain 1 399 619 - -
Vvi18g0971 694 ProSiteProfiles Protein kinase domain profile. 324 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0971 694 MobiDBLite consensus disorder prediction 669 688 - -
Vvi18g0971 694 FunFam Wall-associated receptor kinase-like 20 399 608 - -
Vvi18g0971 694 Gene3D Phosphorylase Kinase; domain 1 303 398 - -
Vvi18g0971 694 Pfam Protein kinase domain 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0971 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vvi18g0971 694 FunFam Wall-associated receptor kinase-like 14 291 398 - -
Vvi18g0971 694 SMART serkin_6 324 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0971 694 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 674 IPR044652 GO:0004672
Vvi18g0971 694 ProSitePatterns Protein kinases ATP-binding region signature. 330 351 IPR017441 GO:0005524
Vvi18g0971 694 FunFam Wall-associated receptor kinase-like 14 isoform A 201 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0971 Vvi-Chr18 9901513 9904896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0971 20 689 Receptor kinase-like Gene Family AT2G23450 50.729 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vvi18g0971 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0971 - - vvi:100855306 1378.62