Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0968 ATGTTTCCGGTGAAAGTTGAAGGTAATGTAAAGCAACAAGGCGCCGGTGCGGCAACGGAAAAGGTTGTTGTGGCGGTTAGAGCAGAGAGAGTGATCTCCAAGACTGCATTAGCATGGGCTCTGAGTCACGTCGTTCACGCCGGCGATTGCATAACGTTGCTCGCTGTTTTTGCCACGAAGAAAACGGGTCGGAGATTATGGAACTTCCCAAGATTGACAGGGGATTGTGCGAACAGTCACCGGGAGAGATTACCGGATCGGATTTGTGAGATCTCCGAGTCTTGTTCTCAGATGGTTCTCCAGTTCAACGACCAAGTCGAGGTTAGAGTGAGGATTAAGGTGGTATCAGGTACACCTGGCGGTGCAGTGGCAGCTGAAGCAAAGAGCAATGGAGCCAACTGGGTCATACTGGACAAGAAACTGAAGCAAGAACTGAAGCATTGCATGGAGGAACTCCACTGCAACATTGTTGTGATGAAGGGTTCTCAACCAAAAGTCCTTAGGCTGAATTTGGGAAGCTCAAATGAACTTCAAACACCTTTCTTTTCTGCTTCTTCTTCACCAGACATGGAAAACAGAACACTGCAAGGTCACAAGATCAAGCATTCTACTCCAGTGAGCAGCCCTGAAGATCCAAGTACTTCCTTTACTAGAACCACAAGGGAAGGTTCATTATCAAGTTCTGATACATTGACTTCCCCTTTCCTTGTTTATGAACAAAATCCTCTTTTTGAAGGACTGAATAAAGGAAAATACAGGCCAGTTTATGAAGATGATTCAGATGAACCACCAACAGCACTTGACTGTGAAAGGCTTATCACTCTTTCAGCACCCCCAGCATCATCTGTGAAAAGTGACCATCAGAGTGTATTTTGGATTCCCCAAAACCACATCGTTGCTGAGAAGGCCCCATTAAACAAAAACTCCAGAAGCACCCAAAAAATGAGATCTCCTTCCAGAACTCTACTCGACAAGTTTGTTGAGTTTGATAAAGATACGAGGATCAGAGGACCTGGGTCCATCCAAACCCGTCAAAGAGACTACAGTTTTGACTCAACCATCAGAGAGGCGGTCCCTTTAGGCAGAACTTCCTCAAAACCACCTCCTTTGTGCTCACTATGCCAACACAAGGCTCCAGTTTTTGGAAAACCTCCAAGGCAGTTTGCTTATGAAGAGCTACAAGAAGCTACAAACGGATTCTCAGATGAAAATTTCTTGGCAGAAGGTGGGTTTGGTGTGGTTCATAGGGGGGTGCTGAGAAATGGCCAGGTGGTTGCAGTGAAGCAGTTAAAGTATGCTGGGTCTCAAGGAGATGCAGATTTTTGCAGGGAAGTGAGGGTTTTAAGCTGTGCACAGCATAGGAATGTTGTGTTGCTTATTGGATTTTGTATTGAAGGGAGAAAGAGAGTATTGGTTTATGAGTACATATGCAATGGCTCCTTGGACTTCCATCTACATGGAAACAAGACAACCCCACTGGATTGGCAATCACGGCTGAAAATTGCAATTGGAACAGCACGAGGCCTACGATACCTTCATGAAGACTGTAGAGTGGGTTGCATAGTACACAGGGACATGCGACCTAATAATATCCTCCTAACCCATGACTTCGAGCCTCTGGTTGCTGACTTCGGACTTGCTAGATGGCACTCTAACTGGGATATTAATACTGAGGAGAGACTGATTGGAACTTCTGGGTATCTTGCGCCAGAGTATTTGGATGGTGGAAAAATTACACAGAAAGTTGACGTATATGCATTTGGAGTGGTATTATTAGAATTAATGACAGGACAGAGGGCCAGAGACTTGCAATTTTACAGGGGACGGAATTTTTTACCTGAGTGGATCCACCCTCTCCCTGCATTACAGCCAAGCCATATTTTAGCTAACAACTACCAACTTGTGGATCCATGCTTAGCCTCTGATGAACTCCACGACTTCCCCTATCAACTACAGGCAATGGGCTGCGCTGCTTCCTTGTGTCTACGTCAAGATCCTGAATCCAGACCAACCATGTCTAAGGTCCTTAGAGTACTAGAAGGAGGTGATGCTGCAATTCCTCTGTGTTTGGACTTGAATTCAGTTGGAAGTAGAAGTGGCCATATGCATGGTCTGAGCTCACAGACACAGCCTGAGTCAAGGATAAACCACTCTCGCAGGCTTTCACATTGA 2172 0.4567 MFPVKVEGNVKQQGAGAATEKVVVAVRAERVISKTALAWALSHVVHAGDCITLLAVFATKKTGRRLWNFPRLTGDCANSHRERLPDRICEISESCSQMVLQFNDQVEVRVRIKVVSGTPGGAVAAEAKSNGANWVILDKKLKQELKHCMEELHCNIVVMKGSQPKVLRLNLGSSNELQTPFFSASSSPDMENRTLQGHKIKHSTPVSSPEDPSTSFTRTTREGSLSSSDTLTSPFLVYEQNPLFEGLNKGKYRPVYEDDSDEPPTALDCERLITLSAPPASSVKSDHQSVFWIPQNHIVAEKAPLNKNSRSTQKMRSPSRTLLDKFVEFDKDTRIRGPGSIQTRQRDYSFDSTIREAVPLGRTSSKPPPLCSLCQHKAPVFGKPPRQFAYEELQEATNGFSDENFLAEGGFGVVHRGVLRNGQVVAVKQLKYAGSQGDADFCREVRVLSCAQHRNVVLLIGFCIEGRKRVLVYEYICNGSLDFHLHGNKTTPLDWQSRLKIAIGTARGLRYLHEDCRVGCIVHRDMRPNNILLTHDFEPLVADFGLARWHSNWDINTEERLIGTSGYLAPEYLDGGKITQKVDVYAFGVVLLELMTGQRARDLQFYRGRNFLPEWIHPLPALQPSHILANNYQLVDPCLASDELHDFPYQLQAMGCAASLCLRQDPESRPTMSKVLRVLEGGDAAIPLCLDLNSVGSRSGHMHGLSSQTQPESRINHSRRLSH* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0968 723 ProSiteProfiles Protein kinase domain profile. 400 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi18g0968 723 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 372 475 - -
Vvi18g0968 723 Gene3D Transferase(Phosphotransferase) domain 1 476 685 - -
Vvi18g0968 723 MobiDBLite consensus disorder prediction 700 723 - -
Vvi18g0968 723 MobiDBLite consensus disorder prediction 198 229 - -
Vvi18g0968 723 CDD STKc_IRAK 406 681 - -
Vvi18g0968 723 Gene3D Phosphorylase Kinase; domain 1 371 475 - -
Vvi18g0968 723 Gene3D HUPs 18 161 IPR014729 -
Vvi18g0968 723 FunFam Dual-specific kinase DSK1-like 13 160 - -
Vvi18g0968 723 FunFam Os07g0541700 protein 476 564 - -
Vvi18g0968 723 MobiDBLite consensus disorder prediction 700 715 - -
Vvi18g0968 723 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 160 - -
Vvi18g0968 723 PANTHER OS01G0750732 PROTEIN 285 684 - -
Vvi18g0968 723 Pfam Protein tyrosine and serine/threonine kinase 405 678 IPR001245 GO:0004672|GO:0006468
Vvi18g0968 723 SUPERFAMILY Protein kinase-like (PK-like) 381 679 IPR011009 -
Vvi18g0968 723 ProSitePatterns Tyrosine protein kinases specific active-site signature. 521 533 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0968 Vvi-Chr18 9884716 9889786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0968 375 675 Trihelix Transcription Factor Family AT1G68690 47.195 1.50e-80 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vvi18g0968 PK_Tyr_Ser-Thr 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0968 - - vvi:100247217 1459.89