Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0948 ATGTTCTTTAGCTCAAACCCTATAATGGGAACCACATCACCCTTGCCTGATCTCTCCTTGCAGATCAGCCCCCCATCCATTTCAGATTGTGAGGTGAAGGAAGTGGGCTATGACGGTTTCATGAAGAAATCATTCTACAGTGACAGGAGCTCAGCCACTGATTCCGGAAGCAGCGGAAGTGACTTAAGCCATGAAAACGGATTCTTCAGCCCAGAGAGTGGTTTTAATCGTGGACCTGTTGAGCCCATGTTGAGCTTAGGTTTAGAGATGGCAGCTCTAAATCCTCCACCCCTAGAACTACCAAGAAACCTTCATCATAACCACCACAACCACCAACCTCAAATCTACGGGCGTGAGTTCAAGAGAAATTCAAGAATGATGAATGGCAGCAAAAGAAGCATCAGAGCTCCTAGAATGAGATGGACTACAACCCTCCATGCCCATTTCGTCCATGCAGTCCAGCTTCTTGGCGGCCATGAGAGAGCAACACCAAAATCAGTCTTAGAGTTGATGAATGTGAAAGATCTAACTTTAGCTCACGTGAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGAACAGGTCAAGGGCAAACAGATATGGGTTTGAACCAAAGGACAGGGATCGGTCAAGTGGAGCTAGGAGGATTATCTTGTGATAAAGCTGATGCCACCCCTTCTTTTTCTTCCAATACACCTCAACCTTCAACACCGCAAAAAATCTCACGATCTTCGTGGTCATTATCAATGGAGACAAACGATGAAGGCCGCCTCAGTCATGAAAATGGGCTAAAATATTCTCATCTCATGGCAAATGACACCAAGATGGAAGGACATAAGGTTGCCCTCCATGTGGCTGAAGGACCAAAAGAGAGGGTGGATTCTAGCGCCTTGTCACCTTCGGATATGTTGCTTAATCTCGAGTTCACCCTTGGAAGACCAAGTTGGCAAATAGACTACGCGGATCAATCTCCGAATGAGCTAGCTCTTCTCAAGTGTTAA 1014 0.4596 MFFSSNPIMGTTSPLPDLSLQISPPSISDCEVKEVGYDGFMKKSFYSDRSSATDSGSSGSDLSHENGFFSPESGFNRGPVEPMLSLGLEMAALNPPPLELPRNLHHNHHNHQPQIYGREFKRNSRMMNGSKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGQGQTDMGLNQRTGIGQVELGGLSCDKADATPSFSSNTPQPSTPQKISRSSWSLSMETNDEGRLSHENGLKYSHLMANDTKMEGHKVALHVAEGPKERVDSSALSPSDMLLNLEFTLGRPSWQIDYADQSPNELALLKC* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0948 337 MobiDBLite consensus disorder prediction 224 261 - -
Vvi18g0948 337 MobiDBLite consensus disorder prediction 48 70 - -
Vvi18g0948 337 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 190 IPR006447 GO:0003677
Vvi18g0948 337 SUPERFAMILY Homeodomain-like 134 191 IPR009057 -
Vvi18g0948 337 MobiDBLite consensus disorder prediction 48 74 - -
Vvi18g0948 337 MobiDBLite consensus disorder prediction 227 257 - -
Vvi18g0948 337 FunFam Myb family transcription factor 135 193 - -
Vvi18g0948 337 Pfam Myb-like DNA-binding domain 138 189 IPR001005 -
Vvi18g0948 337 Gene3D - 136 193 - -
Vvi18g0948 337 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 323 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0948 Vvi-Chr18 9692544 9695195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0948 1 247 G2-like Transcription Factor Family AT5G42630 47.410 3.92e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi18g0948 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0948 - - vvi:100259077 624.78